| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| dme-mir-1 | MI0000116 | 378 | chr2L | 20487441 | 20487531 | + | High |
| dme-mir-2a-1 | MI0000117 | 20975 | chr2L | 19569897 | 19569972 | - | High |
| dme-mir-2a-2 | MI0000118 | 23216 | chr2L | 19569490 | 19569561 | - | High |
| dme-mir-2b-1 | MI0000119 | 17395 | chr2L | 8258616 | 8258692 | - | High |
| dme-mir-2b-2 | MI0000120 | 18114 | chr2L | 19570182 | 19570264 | - | High |
| dme-mir-4 | MI0000122 | 8 | chr2R | 19661289 | 19661369 | - | High |
| dme-mir-5 | MI0000123 | 10 | chr2R | 19661158 | 19661226 | - | High |
| dme-mir-7 | MI0000127 | 627 | chr2R | 20606067 | 20606154 | + | High |
| dme-mir-8 | MI0000128 | 86 | chr2R | 16831432 | 16831518 | + | High |
| dme-mir-9a | MI0000129 | 3 | chr3L | 19565131 | 19565208 | + | High |
| dme-mir-10 | MI0000130 | 10 | chr3R | 6809506 | 6809582 | - | High |
| dme-mir-11 | MI0000131 | 17234 | chr3R | 21622497 | 21622571 | - | High |
| dme-mir-12 | MI0000132 | 3012 | chrX | 15509473 | 15509546 | + | High |
| dme-mir-13a | MI0000133 | 192 | chr3R | 15417542 | 15417616 | - | High |
| dme-mir-13b-1 | MI0000134 | 15535 | chr3R | 15417408 | 15417475 | - | High |
| dme-mir-13b-2 | MI0000135 | 15849 | chrX | 9091230 | 9091299 | + | High |
| dme-mir-14 | MI0000136 | 56471 | chr2R | 9553762 | 9553824 | + | High |
| dme-mir-263a | MI0000343 | 114 | chr2L | 11953410 | 11953503 | - | - |
| dme-mir-184 | MI0000354 | 6282 | chr2R | 13329402 | 13329501 | - | High |
| dme-mir-274 | MI0000355 | 1 | chr3L | 11656918 | 11657017 | + | High |
| dme-mir-275 | MI0000356 | 8394 | chr2L | 7425795 | 7425892 | + | High |
| dme-mir-92a | MI0000357 | 27265 | chr3R | 25646506 | 25646600 | + | High |
| dme-mir-219 | MI0000358 | 5 | chr3L | 17315006 | 17315105 | + | High |
| dme-mir-276a | MI0000359 | 7929 | chr3L | 10365228 | 10365325 | + | High |
| dme-mir-277 | MI0000360 | 2940 | chr3R | 10100022 | 10100121 | + | High |
| dme-mir-278 | MI0000361 | 8079 | chr2R | 15657066 | 15657163 | + | High |
| dme-mir-133 | MI0000362 | 7 | chr2L | 20616617 | 20616714 | + | High |
| dme-mir-279 | MI0000363 | 59466 | chr3R | 29215585 | 29215684 | + | High |
| dme-mir-33 | MI0000364 | 38467 | chr3L | 19797961 | 19798059 | + | High |
| dme-mir-281-1 | MI0000366 | 136 | chr2R | 12170373 | 12170462 | - | High |
| dme-mir-282 | MI0000367 | 35520 | chr3L | 3251022 | 3251118 | + | High |
| dme-mir-283 | MI0000368 | 2445 | chrX | 15507956 | 15508055 | + | High |
| dme-mir-284 | MI0000369 | 1 | chr3R | 12551515 | 12551614 | - | High |
| dme-mir-281-2 | MI0000370 | 261 | chr2R | 12170153 | 12170244 | - | High |
| dme-mir-34 | MI0000371 | 7485 | chr3R | 10100936 | 10101034 | + | High |
| dme-mir-124 | MI0000373 | 3 | chr2L | 17566370 | 17566469 | + | High |
| dme-mir-79 | MI0000374 | 72707 | chr2L | 16698554 | 16698650 | + | High |
| dme-mir-276b | MI0000375 | 1590 | chr3L | 10319785 | 10319883 | + | High |
| dme-mir-210 | MI0000376 | 6 | chrX | 18128219 | 18128318 | + | High |
| dme-mir-285 | MI0000377 | 39 | chr3L | 11946093 | 11946191 | - | High |
| dme-mir-100 | MI0000378 | 82 | chr2L | 18471434 | 18471533 | + | High |
| dme-mir-92b | MI0000379 | 25844 | chr3R | 25651398 | 25651497 | + | High |
| dme-mir-286 | MI0000380 | 1 | chr2R | 19661422 | 19661521 | - | High |
| dme-mir-263b | MI0000383 | 1 | chr3L | 15843406 | 15843495 | - | High |
| dme-bantam | MI0000387 | 29279 | chr3L | 642208 | 642288 | + | High |
| dme-mir-303 | MI0000409 | 7 | chrX | 4366179 | 4366248 | - | High |
| dme-mir-304 | MI0000411 | 7828 | chrX | 15508959 | 15509046 | + | High |
| dme-mir-305 | MI0000412 | 59512 | chr2L | 7425972 | 7426044 | + | High |
| dme-mir-9c | MI0000413 | 24983 | chr2L | 16697924 | 16698015 | + | High |
| dme-mir-306 | MI0000414 | 61685 | chr2L | 16698404 | 16698488 | + | High |
| dme-mir-9b | MI0000415 | 14889 | chr2L | 16698744 | 16698834 | + | High |
| dme-let-7 | MI0000416 | 211 | chr2L | 18472034 | 18472111 | + | High |
| dme-mir-125 | MI0000417 | 91 | chr2L | 18472315 | 18472424 | + | High |
| dme-mir-307a | MI0000418 | 553 | chr2R | 9621251 | 9621338 | - | High |
| dme-mir-308 | MI0000419 | 167012 | chr2R | 14215802 | 14215864 | - | High |
| dme-mir-31a | MI0000420 | 8 | chr2R | 17783795 | 17783886 | - | High |
| dme-mir-310 | MI0000422 | 3 | chr2R | 20583752 | 20583840 | - | High |
| dme-mir-311 | MI0000423 | 3 | chr2R | 20583877 | 20583960 | - | High |
| dme-mir-312 | MI0000424 | 1 | chr2R | 20584056 | 20584121 | - | High |
| dme-mir-313 | MI0000425 | 1 | chr2R | 20584190 | 20584260 | - | High |
| dme-mir-314 | MI0000426 | 2 | chr3L | 11773012 | 11773101 | + | High |
| dme-mir-315 | MI0000427 | 12 | chr3L | 18860971 | 18861054 | + | High |
| dme-mir-317 | MI0000429 | 5627 | chr3R | 10091126 | 10091217 | + | High |
| dme-mir-318 | MI0000430 | 313 | chr3R | 10408302 | 10408369 | + | High |
| dme-mir-2c | MI0000431 | 11506 | chr3R | 15417744 | 15417845 | - | High |
| dme-mir-iab-4 | MI0000432 | 1 | chr3R | 16856275 | 16856342 | + | High |
| dme-mir-954 | MI0005806 | 22 | chr4 | 626126 | 626212 | + | - |
| dme-mir-190 | MI0005808 | 2382 | chr3L | 8571799 | 8571898 | + | High |
| dme-mir-193 | MI0005809 | 13 | chr3L | 21574014 | 21574121 | + | High |
| dme-mir-956 | MI0005810 | 2 | chr3L | 11773731 | 11773878 | - | High |
| dme-mir-958 | MI0005812 | 1 | chr3L | 22669289 | 22669380 | - | High |
| dme-mir-375 | MI0005813 | 7 | chr2L | 857542 | 857632 | + | High |
| dme-mir-959 | MI0005814 | 8 | chr2L | 5640940 | 5641037 | + | High |
| dme-mir-960 | MI0005815 | 13 | chr2L | 5641063 | 5641155 | + | High |
| dme-mir-961 | MI0005816 | 2 | chr2L | 5641191 | 5641279 | + | High |
| dme-mir-962 | MI0005817 | 7 | chr2L | 5641298 | 5641389 | + | High |
| dme-mir-963 | MI0005818 | 54 | chr2L | 5641990 | 5642078 | + | High |
| dme-mir-964 | MI0005819 | 8 | chr2L | 5642102 | 5642201 | + | - |
| dme-mir-932 | MI0005820 | 25 | chr2L | 6902062 | 6902152 | + | High |
| dme-mir-965 | MI0005821 | 5743 | chr2L | 243035 | 243141 | - | High |
| dme-mir-966 | MI0005822 | 3 | chr2L | 6045627 | 6045713 | - | High |
| dme-mir-967 | MI0005823 | 5 | chr2L | 12460004 | 12460100 | - | High |
| dme-mir-970 | MI0005827 | 1312 | chrX | 12636336 | 12636430 | + | High |
| dme-mir-971 | MI0005828 | 1 | chrX | 13062072 | 13062167 | + | High |
| dme-mir-974 | MI0005831 | 1 | chrX | 19551678 | 19551778 | + | High |
| dme-mir-976 | MI0005833 | 2 | chrX | 19558895 | 19558991 | + | - |
| dme-mir-980 | MI0005837 | 2 | chrX | 280172 | 280269 | - | High |
| dme-mir-981 | MI0005838 | 7 | chrX | 1788861 | 1788957 | - | High |
| dme-mir-982 | MI0005839 | 22 | chrX | 4365806 | 4365898 | - | High |
| dme-mir-983-1 | MI0005840 | 104 | chrX | 4368309 | 4368399 | - | High |
| dme-mir-983-2 | MI0005841 | 104 | chrX | 4368483 | 4368581 | - | High |
| dme-mir-984 | MI0005842 | 7 | chrX | 4368646 | 4368735 | - | High |
| dme-mir-927 | MI0005843 | 13 | chrX | 15965947 | 15966038 | - | High |
| dme-mir-986 | MI0005845 | 109 | chr2R | 8444982 | 8445081 | + | High |
| dme-mir-987 | MI0005846 | 1 | chr2R | 9313023 | 9313116 | - | - |
| dme-mir-988 | MI0005847 | 2036 | chr2R | 12158872 | 12158970 | - | High |
| dme-mir-989 | MI0005848 | 13283 | chr2R | 14145351 | 14145524 | - | High |
| dme-mir-137 | MI0005849 | 2 | chr2R | 16065254 | 16065344 | - | High |
| dme-mir-991 | MI0005851 | 1 | chr2R | 20585200 | 20585295 | - | High |
| dme-mir-992 | MI0005852 | 7 | chr2R | 20585314 | 20585405 | - | High |
| dme-mir-929 | MI0005853 | 9 | chr3R | 4295369 | 4295456 | + | High |
| dme-mir-994 | MI0005855 | 100 | chr3R | 10408137 | 10408227 | + | High |
| dme-mir-995 | MI0005856 | 5315 | chr3R | 20735923 | 20736012 | + | High |
| dme-mir-996 | MI0005857 | 106704 | chr3R | 29217184 | 29217280 | + | - |
| dme-mir-252 | MI0005858 | 10 | chr3R | 13464219 | 13464311 | - | High |
| dme-mir-998 | MI0005860 | 1514 | chr3R | 21621879 | 21622021 | - | High |
| dme-mir-999 | MI0005861 | 856 | chr3R | 21798227 | 21798331 | - | High |
| dme-mir-1000 | MI0005862 | 1 | chr3R | 25588859 | 25588958 | - | High |
| dme-mir-1003 | MI0005864 | 955 | chr3R | 24658605 | 24658660 | + | High |
| dme-mir-1004 | MI0005865 | 1 | chr2L | 3767621 | 3767688 | + | - |
| dme-mir-1005 | MI0005866 | 22 | chr2L | 4343696 | 4343756 | + | High |
| dme-mir-1006 | MI0005867 | 328 | chr2L | 16724795 | 16724858 | - | High |
| dme-mir-1007 | MI0005868 | 39 | chrX | 21296385 | 21296449 | - | High |
| dme-mir-1008 | MI0005869 | 829 | chr2R | 10885533 | 10885589 | + | High |
| dme-mir-1009 | MI0005870 | 12 | chr2R | 23993054 | 23993114 | - | - |
| dme-mir-1010 | MI0005871 | 591 | chr3R | 22292879 | 22292949 | + | High |
| dme-mir-1012 | MI0005873 | 173 | chr3R | 26861349 | 26861407 | - | High |
| dme-mir-1013 | MI0005874 | 6 | chr3R | 30791636 | 30791696 | - | - |
| dme-mir-1015 | MI0005876 | 2 | chr3R | 24339232 | 24339295 | + | - |
| dme-mir-1016 | MI0005877 | 6 | chr2R | 14233130 | 14233187 | - | - |
| dme-mir-1017 | MI0005878 | 3 | chr3R | 24488612 | 24488682 | + | - |
| dme-mir-2279 | MI0011289 | 7 | chr2R | 2552170 | 2552282 | - | High |
| dme-mir-2280 | MI0011290 | 3 | chr2L | 1831685 | 1831799 | - | - |
| dme-mir-2281 | MI0011291 | 5 | chr3R | 14396399 | 14396501 | - | - |
| dme-mir-2282 | MI0011292 | 1 | chr3L | 3412145 | 3412251 | - | - |
| dme-mir-2283 | MI0011293 | 3 | chr3R | 9517524 | 9517599 | + | - |
| dme-mir-2489 | MI0011578 | 9 | chr2L | 13609974 | 13610068 | + | - |
| dme-mir-2497 | MI0011586 | 7 | chr2L | 16678240 | 16678335 | + | - |
| dme-mir-2500 | MI0011589 | 25 | chr3L | 16998457 | 16998524 | - | - |
| dme-mir-2501 | MI0011590 | 6 | chr3L | 8111107 | 8111177 | + | - |
| dme-mir-3641 | MI0016041 | 2 | chrX | 2171086 | 2171154 | + | - |
| dme-mir-3643 | MI0016043 | 2 | chr2R | 17766393 | 17766460 | - | - |
| dme-mir-4910 | MI0017692 | 2 | chr2L | 4817816 | 4817881 | - | - |
| dme-mir-2535b | MI0017699 | 86 | chrX | 21298275 | 21298345 | - | - |
| dme-mir-4943 | MI0017729 | 1 | chr2L | 16528375 | 16528491 | - | - |
| dme-mir-4948 | MI0017734 | 2 | chr3R | 31051098 | 31051203 | - | - |
| dme-mir-4950 | MI0017736 | 1 | chr3R | 7451452 | 7451543 | + | - |
| dme-mir-4951 | MI0017737 | 2 | chr3R | 21316716 | 21316865 | + | High |
| dme-mir-4953 | MI0017739 | 2 | chr3R | 22774140 | 22774232 | + | - |
| dme-mir-4955 | MI0017741 | 7 | chrX | 2544740 | 2544908 | - | - |
| dme-mir-4957 | MI0017743 | 2 | chrX | 15319954 | 15320037 | - | - |
| dme-mir-4961 | MI0017747 | 3 | chrX | 1373623 | 1373755 | + | - |
| dme-mir-4962 | MI0017748 | 1 | chrX | 3777382 | 3777505 | + | - |
| dme-mir-4964 | MI0017750 | 1 | chrX | 8965801 | 8965912 | + | - |
| dme-mir-4966 | MI0017752 | 1 | chrX | 19558370 | 19558496 | + | High |
| dme-mir-4968 | MI0017754 | 14 | chr3L | 11552539 | 11552693 | - | High |
| dme-mir-4971 | MI0017757 | 1 | chr2L | 3463290 | 3463400 | - | - |
| dme-mir-4972 | MI0017758 | 1 | chr2L | 3636967 | 3637073 | - | - |
| dme-mir-4974 | MI0017760 | 1 | chr2L | 21263933 | 21264034 | + | - |
| dme-mir-4975 | MI0017761 | 3 | chr2R | 6707163 | 6707273 | - | - |
| dme-mir-4976 | MI0017762 | 22 | chr2R | 6835533 | 6835635 | - | - |
| dme-mir-4977 | MI0017763 | 1 | chr2R | 7406733 | 7406837 | - | - |
| dme-mir-9370 | MI0028919 | 2 | chrX | 11710252 | 11710301 | - | - |
| dme-mir-9371 | MI0028920 | 1 | chr3R | 9989120 | 9989180 | + | High |
| dme-mir-9372 | MI0028921 | 2 | chrX | 633691 | 633751 | - | - |
| dme-mir-9374 | MI0028923 | 1 | chr2L | 21238301 | 21238361 | + | - |
| dme-mir-9375 | MI0028924 | 5 | chr3R | 6451551 | 6451609 | - | - |
| dme-mir-9384 | MI0028933 | 1 | chr3R | 4748664 | 4748723 | - | - |
| dme-mir-9388 | MI0028938 | 12 | chr3L | 22945116 | 22945207 | + | High |
| dme-mir-10404 | MI0033427 | 708 | chrX | 23205159 | 23205227 | + | High |
| dme-mir-11182 | MI0035973 | 13 | chr2R | 18180151 | 18180205 | - | - |