Deep sequencing reads for stem-loop sequence MI0000176

Stem-loop ID mmu-mir-154
Reads 
     mmu-miR-154-5p                      mmu-miR-154-3p              Count     RPM (mean number of reads per million)
...GAUAGGUUAUCCGUGUUGCCUUCG.......................................  2         0.00678
....AUAGGUUAUCCGUGUUGCCUUCG.......................................  4         0.127
....AUAGGUUAUCCGUGUUGC............................................  1         0.0145
.....UAGGUUAUCCGUGUUGCCUUCG.......................................  12532     195
.....UAGGUUAUCCGUGUUGCCUUC........................................  876       13.1
.....UAGGUUAUCCGUGUUGC............................................  54        0.93
.....UAGGUUAUCCGUGUUGCCU..........................................  54        0.973
.....UAGGUUAUCCGUGUUGCCUU.........................................  53        0.487
.....UAGGUUAUCCGUGUUGCC...........................................  50        1.06
.....UAGGUUAUCCGUGUUGCCUUCGC......................................  23        0.326
.....UAGGUUAUCCGUGUUGCCUUCGCU.....................................  4         0.0572
......AGGUUAUCCGUGUUGCCUUCG.......................................  298       2.96
......AGGUUAUCCGUGUUGCCUUC........................................  92        0.989
......AGGUUAUCCGUGUUGCCU..........................................  1         0.00302
.......GGUUAUCCGUGUUGCCUUCG.......................................  87        0.928
.......GGUUAUCCGUGUUGCCUUC........................................  7         0.0574
.......GGUUAUCCGUGUUGCCUU.........................................  2         0.0193
........GUUAUCCGUGUUGCCUUCG.......................................  10        0.0551
........GUUAUCCGUGUUGCCUUC........................................  2         0.00722
.........UUAUCCGUGUUGCCUUCG.......................................  6         0.0312
..........UAUCCGUGUUGCCUUCG.......................................  4         0.0444
.........................................AAUCAUACACGGUUGACCUAUU...  17437     312
.........................................AAUCAUACACGGUUGACCUAU....  1220      19.9
.........................................AAUCAUACACGGUUGACCU......  405       7.41
.........................................AAUCAUACACGGUUGACCUAUUU..  168       1.82
.........................................AAUCAUACACGGUUGACCUA.....  163       2.81
.........................................AAUCAUACACGGUUGACC.......  38        0.566
.........................................AAUCAUACACGGUUGAC........  37        0.728
.........................................AAUCAUACACGGUUGACCUAUUUU.  7         0.0465
.........................................AAUCAUACACGGUUGACCUAUUUUU  1         0.00324
..........................................AUCAUACACGGUUGACCUAUU...  74        1.74
..........................................AUCAUACACGGUUGACCUAU....  4         0.0367
..........................................AUCAUACACGGUUGACCUAUUU..  1         0.0055
..........................................AUCAUACACGGUUGACCU......  1         0.00339
...........................................UCAUACACGGUUGACCUAUU...  18        0.449
...........................................UCAUACACGGUUGACCUAU....  1         0.0184
............................................CAUACACGGUUGACCUAUU...  37        0.652
.............................................AUACACGGUUGACCUAUU...  164       4.19
.............................................AUACACGGUUGACCUAU....  7         0.207
.............................................AUACACGGUUGACCUAUUU..  3         0.0262
..............................................UACACGGUUGACCUAUU...  26        0.528
...............................................ACACGGUUGACCUAUUU..  1         0.00339
GAAGAUAGGUUAUCCGUGUUGCCUUCGCUUUAUUCGUGACGAAUCAUACACGGUUGACCUAUUUUU
((((((((((((.((((((....(((((.........).))))....)))))).)))))))))))) (-25.00)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000029 16ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000030 15ovary GEO : GSM510434 [ Chiang HR et al.]
ER0000000031 2ovary GEO : GSM510435 [ Chiang HR et al.]
ER0000000032 4testes GEO : GSM510436 [ Chiang HR et al.]
ER0000000033 6testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 15testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000035 2testes GEO : GSM510439 [ Chiang HR et al.]
ER0000000036 217brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 413brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 1318brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 162brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 4775brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 45whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 222whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 473whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 61whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 1363whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 1962whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 2197whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 2090whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 2187whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 2209whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 1996whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 7415whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 387embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 1957embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 2505embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 315embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 171embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 513embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 616embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 63embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 28embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 61embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 81embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000216 1bone marrow GEO : GSM539835 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 1spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 2spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 1spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000235 86bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 8spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000244 206spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000246 3lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 908 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 213 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000250 320brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 1lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000252 3liver GEO : GSM539871 strain: C57BL/6J, gender: male
ER0000000254 9pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 161skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 26skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 19salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 1testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 9ovary GEO : GSM539878 strain: C57BL/6J, gender: female
ER0000000260 3spleen GEO : GSM539879 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).