miRNA Search Results

Deep sequencing reads for stem-loop sequence MI0000377
Stem-loop ID	dme-mir-285
Reads	dme-miR-285-5p dme-miR-285-3p Count RPM (mean number of reads per million) ...........AACUGAGAUCGAUUGGUGCAU................................................................... 109 3.34 ...........AACUGAGAUCGAUUGGUGCAUAG................................................................. 36 1.61 ...........AACUGAGAUCGAUUGGUGCAUAGA................................................................ 16 0.898 ...........AACUGAGAUCGAUUGGUGCAUA.................................................................. 8 0.071 ...........AACUGAGAUCGAUUGGUGCA.................................................................... 2 0.266 ...........AACUGAGAUCGAUUGGUGC..................................................................... 2 0.0177 ............ACUGAGAUCGAUUGGUGCAUAGA................................................................ 940 38 ............ACUGAGAUCGAUUGGUGCAUAG................................................................. 647 22.2 ............ACUGAGAUCGAUUGGUGCAU................................................................... 268 6.92 ............ACUGAGAUCGAUUGGUGCAUA.................................................................. 201 7.1 ............ACUGAGAUCGAUUGGUGCA.................................................................... 6 0.175 ............ACUGAGAUCGAUUGGUG...................................................................... 1 0.258 .............CUGAGAUCGAUUGGUGCAUAG................................................................. 67 2 .............CUGAGAUCGAUUGGUGCAUAGA................................................................ 25 0.805 .............CUGAGAUCGAUUGGUGCAU................................................................... 9 0.0948 .............CUGAGAUCGAUUGGUGCAUA.................................................................. 1 0.0238 ..............UGAGAUCGAUUGGUGCAUAG................................................................. 15 0.24 ..............UGAGAUCGAUUGGUGCAUAGA................................................................ 6 0.222 ..............UGAGAUCGAUUGGUGCAUAGAU............................................................... 5 0.0593 ..............UGAGAUCGAUUGGUGCAU................................................................... 5 0.0593 ..............UGAGAUCGAUUGGUGCAUAGAUA.............................................................. 1 0.33 ...............GAGAUCGAUUGGUGCAUAG................................................................. 1 0.065 ................AGAUCGAUUGGUGCAUAG................................................................. 2 0.0476 ...................................UAUCAGGAGAACCCACUCAAUUU......................................... 5 0.103 ...................................UAUCAGGAGAACCCACUCAAUUUAACU..................................... 4 0.132 ...................................UAUCAGGAGAACCCACUCAAU........................................... 2 0.0177 ...................................UAUCAGGAGAACCCACUCAAUUUAAC...................................... 1 0.0238 ...................................UAUCAGGAGAACCCACUCAAUUUAACUC.................................... 1 0.0238 ..............................................................CUAGCACCAUUCGAAAUCAGUGC.............. 1 0.00887 ...............................................................UAGCACCAUUCGAAAUCAGUGCU............. 103110 2.65e+03 ...............................................................UAGCACCAUUCGAAAUCAGUGC.............. 21573 660 ...............................................................UAGCACCAUUCGAAAUCAGUG............... 4671 142 ...............................................................UAGCACCAUUCGAAAUCAGUGCUU............ 1590 45.9 ...............................................................UAGCACCAUUCGAAAUCAGU................ 1323 36.8 ...............................................................UAGCACCAUUCGAAAUCAG................. 94 2.82 ...............................................................UAGCACCAUUCGAAAUCA.................. 26 0.635 ...............................................................UAGCACCAUUCGAAAUCAGUGCUUU........... 9 0.125 ................................................................AGCACCAUUCGAAAUCAGUGCU............. 94 2.23 ................................................................AGCACCAUUCGAAAUCAGUGC.............. 31 0.977 ................................................................AGCACCAUUCGAAAUCAGUG............... 15 0.785 ................................................................AGCACCAUUCGAAAUCAGUGCUU............ 4 0.0653 ................................................................AGCACCAUUCGAAAUCAGU................ 3 0.0266 .................................................................GCACCAUUCGAAAUCAGUGCU............. 825 14.4 .................................................................GCACCAUUCGAAAUCAGUGC.............. 215 3.87 .................................................................GCACCAUUCGAAAUCAGUG............... 32 0.515 .................................................................GCACCAUUCGAAAUCAGUGCUU............ 9 0.38 .................................................................GCACCAUUCGAAAUCAGU................ 6 0.116 ..................................................................CACCAUUCGAAAUCAGUG............... 20 0.222 ..................................................................CACCAUUCGAAAUCAGUGCU............. 14 0.139 ..................................................................CACCAUUCGAAAUCAGUGC.............. 1 0.042 ....................................................................CCAUUCGAAAUCAGUGCU............. 1 0.0857 .....................................................................CAUUCGAAAUCAGUGCU............. 1 0.0294 UCGAAUCGAAGAACUGAGAUCGAUUGGUGCAUAGAUAUCAGGAGAACCCACUCAAUUUAACUCUAGCACCAUUCGAAAUCAGUGCUUUUGAUAAGAAAC ((..(((((((.(((((..((((.((((((.((((......(((......)))........)))))))))).))))..)))))..)))))))..))... (-34.54)

            dme-miR-285-5p                                    dme-miR-285-3p                         Count     RPM (mean number of reads per million)
...........AACUGAGAUCGAUUGGUGCAU...................................................................  109       3.34
...........AACUGAGAUCGAUUGGUGCAUAG.................................................................  36        1.61
...........AACUGAGAUCGAUUGGUGCAUAGA................................................................  16        0.898
...........AACUGAGAUCGAUUGGUGCAUA..................................................................  8         0.071
...........AACUGAGAUCGAUUGGUGCA....................................................................  2         0.266
...........AACUGAGAUCGAUUGGUGC.....................................................................  2         0.0177
............ACUGAGAUCGAUUGGUGCAUAGA................................................................  940       38
............ACUGAGAUCGAUUGGUGCAUAG.................................................................  647       22.2
............ACUGAGAUCGAUUGGUGCAU...................................................................  268       6.92
............ACUGAGAUCGAUUGGUGCAUA..................................................................  201       7.1
............ACUGAGAUCGAUUGGUGCA....................................................................  6         0.175
............ACUGAGAUCGAUUGGUG......................................................................  1         0.258
.............CUGAGAUCGAUUGGUGCAUAG.................................................................  67        2
.............CUGAGAUCGAUUGGUGCAUAGA................................................................  25        0.805
.............CUGAGAUCGAUUGGUGCAU...................................................................  9         0.0948
.............CUGAGAUCGAUUGGUGCAUA..................................................................  1         0.0238
..............UGAGAUCGAUUGGUGCAUAG.................................................................  15        0.24
..............UGAGAUCGAUUGGUGCAUAGA................................................................  6         0.222
..............UGAGAUCGAUUGGUGCAUAGAU...............................................................  5         0.0593
..............UGAGAUCGAUUGGUGCAU...................................................................  5         0.0593
..............UGAGAUCGAUUGGUGCAUAGAUA..............................................................  1         0.33
...............GAGAUCGAUUGGUGCAUAG.................................................................  1         0.065
................AGAUCGAUUGGUGCAUAG.................................................................  2         0.0476
...................................UAUCAGGAGAACCCACUCAAUUU.........................................  5         0.103
...................................UAUCAGGAGAACCCACUCAAUUUAACU.....................................  4         0.132
...................................UAUCAGGAGAACCCACUCAAU...........................................  2         0.0177
...................................UAUCAGGAGAACCCACUCAAUUUAAC......................................  1         0.0238
...................................UAUCAGGAGAACCCACUCAAUUUAACUC....................................  1         0.0238
..............................................................CUAGCACCAUUCGAAAUCAGUGC..............  1         0.00887
...............................................................UAGCACCAUUCGAAAUCAGUGCU.............  103110    2.65e+03
...............................................................UAGCACCAUUCGAAAUCAGUGC..............  21573     660
...............................................................UAGCACCAUUCGAAAUCAGUG...............  4671      142
...............................................................UAGCACCAUUCGAAAUCAGUGCUU............  1590      45.9
...............................................................UAGCACCAUUCGAAAUCAGU................  1323      36.8
...............................................................UAGCACCAUUCGAAAUCAG.................  94        2.82
...............................................................UAGCACCAUUCGAAAUCA..................  26        0.635
...............................................................UAGCACCAUUCGAAAUCAGUGCUUU...........  9         0.125
................................................................AGCACCAUUCGAAAUCAGUGCU.............  94        2.23
................................................................AGCACCAUUCGAAAUCAGUGC..............  31        0.977
................................................................AGCACCAUUCGAAAUCAGUG...............  15        0.785
................................................................AGCACCAUUCGAAAUCAGUGCUU............  4         0.0653
................................................................AGCACCAUUCGAAAUCAGU................  3         0.0266
.................................................................GCACCAUUCGAAAUCAGUGCU.............  825       14.4
.................................................................GCACCAUUCGAAAUCAGUGC..............  215       3.87
.................................................................GCACCAUUCGAAAUCAGUG...............  32        0.515
.................................................................GCACCAUUCGAAAUCAGUGCUU............  9         0.38
.................................................................GCACCAUUCGAAAUCAGU................  6         0.116
..................................................................CACCAUUCGAAAUCAGUG...............  20        0.222
..................................................................CACCAUUCGAAAUCAGUGCU.............  14        0.139
..................................................................CACCAUUCGAAAUCAGUGC..............  1         0.042
....................................................................CCAUUCGAAAUCAGUGCU.............  1         0.0857
.....................................................................CAUUCGAAAUCAGUGCU.............  1         0.0294
UCGAAUCGAAGAACUGAGAUCGAUUGGUGCAUAGAUAUCAGGAGAACCCACUCAAUUUAACUCUAGCACCAUUCGAAAUCAGUGCUUUUGAUAAGAAAC
((..(((((((.(((((..((((.((((((.((((......(((......)))........)))))))))).))))..)))))..)))))))..))... (-34.54)

miRBase

Deep sequencing reads for stem-loop sequence MI0000377

Filter reads

References

References
1	PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2	PMID:18501606 "Endogenous RNA interference provides a somatic defense against Drosophila transposons" Chung WJ, Okamura K, Martin R, Lai EC Curr Biol. 18:795-802(2008).