Deep sequencing reads for stem-loop sequence MI0000416

Stem-loop ID dme-let-7
Reads 
           dme-let-7-5p                          dme-let-7-3p                   Count     RPM (mean number of reads per million)
.........UUGAGGUAGUAGGUUGUAUAG................................................  8         0.437
.........UUGAGGUAGUAGGUUGUAUAGU...............................................  1         0.0194
..........UGAGGUAGUAGGUUGUAUAGU...............................................  106534    5.04e+03
..........UGAGGUAGUAGGUUGUAUAG................................................  40811     1.47e+03
..........UGAGGUAGUAGGUUGUAUAGUA..............................................  38373     2.16e+03
..........UGAGGUAGUAGGUUGUAU..................................................  2947      93.7
..........UGAGGUAGUAGGUUGUAUA.................................................  2614      86.9
..........UGAGGUAGUAGGUUGUAUAGUAG.............................................  47        2.64
..........UGAGGUAGUAGGUUGUA...................................................  26        2.56
..........UGAGGUAGUAGGUUGUAUAGUAGU............................................  1         0.024
..........UGAGGUAGUAGGUUGUAUAGUAGUA...........................................  1         0.269
...........GAGGUAGUAGGUUGUAUAGU...............................................  184       6.37
...........GAGGUAGUAGGUUGUAUAGUA..............................................  42        3.57
...........GAGGUAGUAGGUUGUAUAG................................................  38        1.57
...........GAGGUAGUAGGUUGUAUAGUAG.............................................  1         0.0194
............AGGUAGUAGGUUGUAUAGU...............................................  10        0.627
............AGGUAGUAGGUUGUAUAGUA..............................................  9         0.634
............AGGUAGUAGGUUGUAUAG................................................  8         0.273
.............GGUAGUAGGUUGUAUAGUA..............................................  88        2.77
.............GGUAGUAGGUUGUAUAGU...............................................  86        2.3
.............GGUAGUAGGUUGUAUAG................................................  3         0.214
..............GUAGUAGGUUGUAUAGU...............................................  6         0.391
..............GUAGUAGGUUGUAUAGUA..............................................  2         0.133
...............UAGUAGGUUGUAUAGUA..............................................  13        2.7
............................................CAUACUAUACAAUGUGCUAGC.............  3         0.159
..............................................UACUAUACAAUGUGCUAGCUUU..........  1         0.0194
...............................................ACUAUACAAUGUGCUAGCUUUCU........  1         0.0211
................................................CUAUACAAUGUGCUAGCUUUCU........  1734      98.8
................................................CUAUACAAUGUGCUAGCUUUC.........  215       15.1
................................................CUAUACAAUGUGCUAGCUUU..........  18        1.01
................................................CUAUACAAUGUGCUAGCU............  10        0.227
................................................CUAUACAAUGUGCUAGCUUUCUU.......  7         0.268
................................................CUAUACAAUGUGCUAGCUU...........  2         0.0405
.................................................UAUACAAUGUGCUAGCUUUCU........  13        0.629
.................................................UAUACAAUGUGCUAGCUUUC.........  1         0.0194
...................................................UACAAUGUGCUAGCUUUCU........  2         0.106
....................................................ACAAUGUGCUAGCUUUCU........  2         0.0388
UCUGGCAAAUUGAGGUAGUAGGUUGUAUAGUAGUAAUUACACAUCAUACUAUACAAUGUGCUAGCUUUCUUUGCUUGA
((.((((((..(((.(((((.(((((((((((..............))))))))))).))))).)))..)))))).)) (-30.44)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000010 14318head GEO : GSM240749 [ Chung WJ et al.]
ER0000000011 1223S2 cell GEO : GSM272651 [ Chung WJ et al.]
ER0000000012 9S2 cell GEO : GSM272652 [ Chung WJ et al.]
ER0000000013 8Kc cell GEO : GSM272653 [ Chung WJ et al.]
ER0000000014 503imaginal disc GEO : GSM275691 [ Chung WJ et al.]
ER0000000015 6075head GEO : GSM286601 [ Chung WJ et al.]
ER0000000016 2759whole body GEO : GSM286602 [ Chung WJ et al.]
ER0000000017 1947whole body GEO : GSM286603 [ Chung WJ et al.]
ER0000000018 12326embryo GEO : GSM286604 [ Chung WJ et al.]
ER0000000019 1132embryo GEO : GSM286605 [ Chung WJ et al.]
ER0000000020 40embryo GEO : GSM286606 [ Chung WJ et al.]
ER0000000021 86embryo GEO : GSM286607 [ Chung WJ et al.]
ER0000000022 66embryo GEO : GSM286611 [ Chung WJ et al.]
ER0000000023 22embryo GEO : GSM286613 [ Chung WJ et al.]
ER0000000079 746whole body GEO : GSM322208 3rd instar larvae
ER0000000080 1250whole body GEO : GSM322219 2-4 day old pupae
ER0000000081 3729whole body GEO : GSM322245 3rd instar larvae
ER0000000082 3294whole body GEO : GSM322338 2-4 day old pupae
ER0000000083 27606head GEO : GSM322533 adult female head
ER0000000084 70704head GEO : GSM322543 adult male head
ER0000000085 92whole body GEO : GSM360256 1st instar larvae
ER0000000086 18whole body GEO : GSM360257 1st instar larvae
ER0000000087 13020whole body GEO : GSM360260 0-1 day old pupae
ER0000000088 12518whole body GEO : GSM360262 0-2 day old pupae
ER0000000089 56embryo GEO : GSM364902 12-24hr embryo
ER0000000090 908whole body GEO : GSM280082 from 2-4 day old flies
ER0000000091 1318whole body GEO : GSM280083 from 2-4 day old flies
ER0000000092 2436whole body GEO : GSM280084 from 2-4 day old flies
ER0000000093 11014whole body GEO : GSM280085 from 2-4 day old flies
ER0000000094 70whole body GEO : GSM280086 from 2-4 day old flies
ER0000000095 185S2 cell GEO : GSM280087
ER0000000096 98S2 cell GEO : GSM280088
ER0000000099 545imaginal disc GEO : GSM399105 imaginal disc/brain
ER0000000100 9066whole body GEO : GSM399106 female body
ER0000000101 21539whole body GEO : GSM399107 male body
ER0000000102 16S2 cell GEO : GSM371638
ER0000000115 3253head GEO : GSM180328 adult heads (female heads, male heads) [ Ruby JG et al.]
ER0000000116 564whole body GEO : GSM180329 adult bodies (female bodies, male bodies) [ Ruby JG et al.]
ER0000000117 2embryo GEO : GSM180330 very early embryo (0-1) [ Ruby JG et al.]
ER0000000118 11embryo GEO : GSM180331 early embryo (2-6) [ Ruby JG et al.]
ER0000000119 5embryo GEO : GSM180332 mid embryo (6-10) [ Ruby JG et al.]
ER0000000120 2embryo GEO : GSM180333 late embryo (12-24) [ Ruby JG et al.]
ER0000000121 150whole body GEO : GSM180334 larvae: 1st instar and 3rd instars [ Ruby JG et al.]
ER0000000122 72imaginal disc GEO : GSM180335 [ Ruby JG et al.]
ER0000000123 224whole body GEO : GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day [ Ruby JG et al.]
ER0000000127 289ovary GEO : GSM385744 Ovary Somatic Sheet (OSS) cells
ER0000000128 597ovary GEO : GSM385748 Ovary Somatic Sheet (OSS) cells
ER0000000129 856ovary GEO : GSM385821 Ovary Somatic Sheet (OSS) cells
ER0000000130 189ovary GEO : GSM385822 Ovary Somatic Sheet (OSS) cells
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2
PMID:18501606 "Endogenous RNA interference provides a somatic defense against Drosophila transposons" Chung WJ, Okamura K, Martin R, Lai EC Curr Biol. 18:795-802(2008).