Deep sequencing reads for stem-loop sequence MI0000793

Stem-loop ID mmu-mir-376a
Reads 
    mmu-miR-376a-5p                      mmu-miR-376a-3p              Count     RPM (mean number of reads per million)
.AAAAGGUAGAUUCUCCUUCUAUGAGU.........................................  7         0.0847
...AAGGUAGAUUCUCCUUCUAUGAGU.........................................  19        0.25
...AAGGUAGAUUCUCCUUCUAUGAGUA........................................  6         0.0504
...AAGGUAGAUUCUCCUUCUAUG............................................  3         0.0321
...AAGGUAGAUUCUCCUUCUAUGA...........................................  1         0.0143
....AGGUAGAUUCUCCUUCUAUGAGU.........................................  392       4.61
....AGGUAGAUUCUCCUUCUAUGAG..........................................  14        0.164
....AGGUAGAUUCUCCUUCUAUGAGUA........................................  13        0.155
....AGGUAGAUUCUCCUUCUAUG............................................  4         0.0476
....AGGUAGAUUCUCCUUCUAUGA...........................................  3         0.0206
....AGGUAGAUUCUCCUUCUAU.............................................  1         0.00307
....AGGUAGAUUCUCCUUCUAUGAGUAC.......................................  1         0.0149
.....GGUAGAUUCUCCUUCUAUGAGU.........................................  2834      46.1
.....GGUAGAUUCUCCUUCUAUGAGUA........................................  524       8.66
.....GGUAGAUUCUCCUUCUAUGAG..........................................  71        0.775
.....GGUAGAUUCUCCUUCUAUGAGUAC.......................................  25        0.34
.....GGUAGAUUCUCCUUCUAUGA...........................................  15        0.211
.....GGUAGAUUCUCCUUCUAUG............................................  12        0.0614
.....GGUAGAUUCUCCUUCUAU.............................................  2         0.00643
......GUAGAUUCUCCUUCUAUGAGU.........................................  1866      26.6
......GUAGAUUCUCCUUCUAUGAGUA........................................  1253      22.3
......GUAGAUUCUCCUUCUAUGAGUAC.......................................  108       1.5
......GUAGAUUCUCCUUCUAUGAG..........................................  60        1.02
......GUAGAUUCUCCUUCUAUG............................................  11        0.109
......GUAGAUUCUCCUUCUAUGA...........................................  8         0.0778
......GUAGAUUCUCCUUCUAUGAGUACA......................................  2         0.0659
......GUAGAUUCUCCUUCUAU.............................................  1         0.0138
.......UAGAUUCUCCUUCUAUGAGUAC.......................................  439       6.82
.......UAGAUUCUCCUUCUAUGAGU.........................................  114       3.08
.......UAGAUUCUCCUUCUAUGAGUA........................................  47        1.15
.......UAGAUUCUCCUUCUAUGAG..........................................  2         0.0206
.......UAGAUUCUCCUUCUAUGA...........................................  1         0.0149
.......UAGAUUCUCCUUCUAUGAGUACA......................................  1         0.00322
.......UAGAUUCUCCUUCUAUGAGUACAA.....................................  1         0.0174
........AGAUUCUCCUUCUAUGAGUAC.......................................  3         0.0349
........AGAUUCUCCUUCUAUGAGU.........................................  1         0.0149
.........GAUUCUCCUUCUAUGAGU.........................................  4         0.0756
.........GAUUCUCCUUCUAUGAGUA........................................  2         0.021
..........AUUCUCCUUCUAUGAGU.........................................  14        0.0994
..........AUUCUCCUUCUAUGAGUAC.......................................  1         0.0135
...........UUCUCCUUCUAUGAGUA........................................  56        0.837
...........UUCUCCUUCUAUGAGUAC.......................................  8         0.195
.............................AAUAUUAAUGACUAAUCGUAGAG................  6         0.0992
.............................AAUAUUAAUGACUAAUCGUAGAGG...............  5         0.0358
.............................AAUAUUAAUGACUAAUCGUAGA.................  3         0.0188
.............................AAUAUUAAUGACUAAUCGUA...................  1         0.0105
.............................AAUAUUAAUGACUAAUCGU....................  1         0.0105
..............................AUAUUAAUGACUAAUCGUAG..................  1         0.00322
....................................AUGACUAAUCGUAGAGG...............  1         0.0147
.....................................UGACUAAUCGUAGAGGAAAAUCC........  1         0.00322
.....................................UGACUAAUCGUAGAGGAAAAUC.........  1         0.0159
.......................................ACUAAUCGUAGAGGAAAAUCCA.......  1         0.00307
........................................CUAAUCGUAGAGGAAAAUCCACGU....  3         0.0206
.........................................UAAUCGUAGAGGAAAAUCCACGU....  1         0.0143
.........................................UAAUCGUAGAGGAAAAUCCAC......  1         0.00322
.........................................UAAUCGUAGAGGAAAAUCCACG.....  1         0.0138
..........................................AAUCGUAGAGGAAAAUCCACGU....  460       8.43
..........................................AAUCGUAGAGGAAAAUCCACG.....  80        0.975
..........................................AAUCGUAGAGGAAAAUCCACGUU...  29        0.621
..........................................AAUCGUAGAGGAAAAUCCAC......  16        0.166
..........................................AAUCGUAGAGGAAAAUCCA.......  12        0.0463
..........................................AAUCGUAGAGGAAAAUCC........  1         0.0912
...........................................AUCGUAGAGGAAAAUCCACGU....  97551     1.44e+03
...........................................AUCGUAGAGGAAAAUCCACGUU...  17928     267
...........................................AUCGUAGAGGAAAAUCCACG.....  3234      46.3
...........................................AUCGUAGAGGAAAAUCCAC......  1675      17.9
...........................................AUCGUAGAGGAAAAUCCACGUUU..  1021      15.4
...........................................AUCGUAGAGGAAAAUCC........  110       2
...........................................AUCGUAGAGGAAAAUCCA.......  80        1.35
...........................................AUCGUAGAGGAAAAUCCACGUUUU.  45        0.399
...........................................AUCGUAGAGGAAAAUCCACGUUUUC  9         0.0449
............................................UCGUAGAGGAAAAUCCACGU....  342       5.09
............................................UCGUAGAGGAAAAUCCACGUUU..  157       2.21
............................................UCGUAGAGGAAAAUCCACGUU...  72        0.945
............................................UCGUAGAGGAAAAUCCAC......  20        0.313
............................................UCGUAGAGGAAAAUCCACG.....  12        0.172
............................................UCGUAGAGGAAAAUCCACGUUUU.  10        0.0999
............................................UCGUAGAGGAAAAUCCA.......  5         0.0443
............................................UCGUAGAGGAAAAUCCACGUUUUC  1         0.00307
.............................................CGUAGAGGAAAAUCCACGU....  298       3.87
.............................................CGUAGAGGAAAAUCCACGUU...  50        0.582
.............................................CGUAGAGGAAAAUCCAC......  28        0.278
.............................................CGUAGAGGAAAAUCCACG.....  3         0.0294
.............................................CGUAGAGGAAAAUCCACGUUUU.  1         0.012
.............................................CGUAGAGGAAAAUCCACGUUU..  1         0.0933
..............................................GUAGAGGAAAAUCCACGU....  3523      45.5
..............................................GUAGAGGAAAAUCCACGUU...  600       8.92
..............................................GUAGAGGAAAAUCCACG.....  71        0.972
..............................................GUAGAGGAAAAUCCACGUUU..  27        0.35
..............................................GUAGAGGAAAAUCCACGUUUU.  16        0.164
..............................................GUAGAGGAAAAUCCACGUUUUC  3         0.0215
...............................................UAGAGGAAAAUCCACGU....  66        1.29
...............................................UAGAGGAAAAUCCACGUUUUC  1         0.00363
................................................AGAGGAAAAUCCACGUU...  38        0.434
................................................AGAGGAAAAUCCACGUUU..  1         0.00363
.................................................GAGGAAAAUCCACGUUU..  2         0.0185
UAAAAGGUAGAUUCUCCUUCUAUGAGUACAAUAUUAAUGACUAAUCGUAGAGGAAAAUCCACGUUUUC
.((((.((.((((.((((.((((((...................)))))))))).)))).)).)))). (-16.21)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000029 4ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000030 24ovary GEO : GSM510434 [ Chiang HR et al.]
ER0000000031 7ovary GEO : GSM510435 [ Chiang HR et al.]
ER0000000032 7testes GEO : GSM510436 [ Chiang HR et al.]
ER0000000033 6testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 36testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000035 2testes GEO : GSM510439 [ Chiang HR et al.]
ER0000000036 1195brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 732brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 6784brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 855brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 27450brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 230whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 274whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 2074whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 387whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 7013whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 9417whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 10342whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 9019whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 9183whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 8996whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 8419whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 36162whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 1549embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 1193embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 10614embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 1332embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 147embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 117embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 588embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 54embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 84embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 34embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 293embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000217 1bone marrow GEO : GSM539836 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000223 1spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 7spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 1peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000229 7bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000230 1bone marrow GEO : GSM539849 strain: C57BL/6J, gender: male
ER0000000234 1bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000235 332bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 57spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000244 208spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 1874 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 1149 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000249 4heart GEO : GSM539868 strain: C57BL/6J, gender: male
ER0000000250 1839brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 6lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000252 5liver GEO : GSM539871 strain: C57BL/6J, gender: male
ER0000000253 2kidney GEO : GSM539872 strain: C57BL/6J, gender: male
ER0000000254 99pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 84skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 17skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 21salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 13testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 30ovary GEO : GSM539878 strain: C57BL/6J, gender: female
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).