miRNA Search Results

Deep sequencing reads for stem-loop sequence MI0001594
Stem-loop ID	ame-mir-7
Reads	ame-miR-7 Count RPM (mean number of reads per million) ....CGCCGUUGCAUGGAAGACU................................................................ 1 0.907 ............CAUGGAAGACUAGUGAUUUUGUUGU.................................................. 1 0.907 ............CAUGGAAGACUAGUGAUUUUGUUGUU................................................. 1 0.907 ............CAUGGAAGACUAGUGAUUU........................................................ 1 0.907 ............CAUGGAAGACUAGUGAUUUUG...................................................... 1 0.907 ............CAUGGAAGACUAGUGAUUUUGUUG................................................... 1 0.907 .............AUGGAAGACUAGUGAUUUUGUUGUUC................................................ 1 0.907 ..............UGGAAGACUAGUGAUUUUGUUGU.................................................. 920 834 ..............UGGAAGACUAGUGAUUUUGUUG................................................... 842 763 ..............UGGAAGACUAGUGAUUUUGUUGUU................................................. 685 621 ..............UGGAAGACUAGUGAUUUUGUU.................................................... 643 583 ..............UGGAAGACUAGUGAUUUUGUUGUUCU............................................... 534 484 ..............UGGAAGACUAGUGAUUUUGUUGUUC................................................ 202 183 ..............UGGAAGACUAGUGAUUUUGU..................................................... 132 120 ..............UGGAAGACUAGUGAUUUUG...................................................... 116 105 ..............UGGAAGACUAGUGAUUUUGUUGUUCUA.............................................. 11 9.97 ..............UGGAAGACUAGUGAUUUUGUUGUUCUACU............................................ 10 9.07 ..............UGGAAGACUAGUGAUUUUGUUGUUCUACUU........................................... 5 4.53 ..............UGGAAGACUAGUGAUUUUGUUGUUCUAC............................................. 4 3.63 ...............GGAAGACUAGUGAUUUUGUUGU.................................................. 4 3.63 ...............GGAAGACUAGUGAUUUUGUUG................................................... 3 2.72 ...............GGAAGACUAGUGAUUUUGUUGUU................................................. 3 2.72 ...............GGAAGACUAGUGAUUUUGUUGUUCUA.............................................. 2 1.81 ...............GGAAGACUAGUGAUUUUGUUGUUCU............................................... 2 1.81 ...............GGAAGACUAGUGAUUUUGUUGUUC................................................ 1 0.907 ...............GGAAGACUAGUGAUUUUGU..................................................... 1 0.907 ...............GGAAGACUAGUGAUUUUGUU.................................................... 1 0.907 ................GAAGACUAGUGAUUUUGUUGUU................................................. 3 2.72 .................AAGACUAGUGAUUUUGUUGUU................................................. 1 0.907 .................AAGACUAGUGAUUUUGUUGUUC................................................ 1 0.907 .................AAGACUAGUGAUUUUGUUGU.................................................. 1 0.907 ..................AGACUAGUGAUUUUGUUGU.................................................. 1 0.907 ........................GUGAUUUUGUUGUUCUACU............................................ 1 0.907 ......................................CUACUUUCGAUAUAACAAGGAAUCACUAAUCA................. 1 0.907 ......................................CUACUUUCGAUAUAACAAGGAAUCACUAAUCAUC............... 1 0.907 ..................................................UAACAAGGAAUCACUAAUCAUCCUA............ 1 0.907 ....................................................ACAAGGAAUCACUAAUCAUCC.............. 1 0.907 .....................................................CAAGGAAUCACUAAUCAUCCUAC........... 71 64.4 .....................................................CAAGGAAUCACUAAUCAUCCU............. 34 30.8 .....................................................CAAGGAAUCACUAAUCAUCC.............. 21 19 .....................................................CAAGGAAUCACUAAUCAUC............... 14 12.7 .....................................................CAAGGAAUCACUAAUCAUCCUA............ 13 11.8 .....................................................CAAGGAAUCACUAAUCAUCCUACA.......... 1 0.907 ......................................................AAGGAAUCACUAAUCAUCCUACA.......... 4 3.63 ......................................................AAGGAAUCACUAAUCAUCCUA............ 3 2.72 ......................................................AAGGAAUCACUAAUCAUCCUAC........... 1 0.907 .......................................................AGGAAUCACUAAUCAUCCUAC........... 1 0.907 CGAGCGCCGUUGCAUGGAAGACUAGUGAUUUUGUUGUUCUACUUUCGAUAUAACAAGGAAUCACUAAUCAUCCUACAAAGGCGCUCG ((((((((.(((...(((.((.(((((((((((((((((.......)).))))))..))))))))).)).)))..))).)))))))) (-37.20)

                   ame-miR-7                                                            Count     RPM (mean number of reads per million)
....CGCCGUUGCAUGGAAGACU................................................................  1         0.907
............CAUGGAAGACUAGUGAUUUUGUUGU..................................................  1         0.907
............CAUGGAAGACUAGUGAUUUUGUUGUU.................................................  1         0.907
............CAUGGAAGACUAGUGAUUU........................................................  1         0.907
............CAUGGAAGACUAGUGAUUUUG......................................................  1         0.907
............CAUGGAAGACUAGUGAUUUUGUUG...................................................  1         0.907
.............AUGGAAGACUAGUGAUUUUGUUGUUC................................................  1         0.907
..............UGGAAGACUAGUGAUUUUGUUGU..................................................  920       834
..............UGGAAGACUAGUGAUUUUGUUG...................................................  842       763
..............UGGAAGACUAGUGAUUUUGUUGUU.................................................  685       621
..............UGGAAGACUAGUGAUUUUGUU....................................................  643       583
..............UGGAAGACUAGUGAUUUUGUUGUUCU...............................................  534       484
..............UGGAAGACUAGUGAUUUUGUUGUUC................................................  202       183
..............UGGAAGACUAGUGAUUUUGU.....................................................  132       120
..............UGGAAGACUAGUGAUUUUG......................................................  116       105
..............UGGAAGACUAGUGAUUUUGUUGUUCUA..............................................  11        9.97
..............UGGAAGACUAGUGAUUUUGUUGUUCUACU............................................  10        9.07
..............UGGAAGACUAGUGAUUUUGUUGUUCUACUU...........................................  5         4.53
..............UGGAAGACUAGUGAUUUUGUUGUUCUAC.............................................  4         3.63
...............GGAAGACUAGUGAUUUUGUUGU..................................................  4         3.63
...............GGAAGACUAGUGAUUUUGUUG...................................................  3         2.72
...............GGAAGACUAGUGAUUUUGUUGUU.................................................  3         2.72
...............GGAAGACUAGUGAUUUUGUUGUUCUA..............................................  2         1.81
...............GGAAGACUAGUGAUUUUGUUGUUCU...............................................  2         1.81
...............GGAAGACUAGUGAUUUUGUUGUUC................................................  1         0.907
...............GGAAGACUAGUGAUUUUGU.....................................................  1         0.907
...............GGAAGACUAGUGAUUUUGUU....................................................  1         0.907
................GAAGACUAGUGAUUUUGUUGUU.................................................  3         2.72
.................AAGACUAGUGAUUUUGUUGUU.................................................  1         0.907
.................AAGACUAGUGAUUUUGUUGUUC................................................  1         0.907
.................AAGACUAGUGAUUUUGUUGU..................................................  1         0.907
..................AGACUAGUGAUUUUGUUGU..................................................  1         0.907
........................GUGAUUUUGUUGUUCUACU............................................  1         0.907
......................................CUACUUUCGAUAUAACAAGGAAUCACUAAUCA.................  1         0.907
......................................CUACUUUCGAUAUAACAAGGAAUCACUAAUCAUC...............  1         0.907
..................................................UAACAAGGAAUCACUAAUCAUCCUA............  1         0.907
....................................................ACAAGGAAUCACUAAUCAUCC..............  1         0.907
.....................................................CAAGGAAUCACUAAUCAUCCUAC...........  71        64.4
.....................................................CAAGGAAUCACUAAUCAUCCU.............  34        30.8
.....................................................CAAGGAAUCACUAAUCAUCC..............  21        19
.....................................................CAAGGAAUCACUAAUCAUC...............  14        12.7
.....................................................CAAGGAAUCACUAAUCAUCCUA............  13        11.8
.....................................................CAAGGAAUCACUAAUCAUCCUACA..........  1         0.907
......................................................AAGGAAUCACUAAUCAUCCUACA..........  4         3.63
......................................................AAGGAAUCACUAAUCAUCCUA............  3         2.72
......................................................AAGGAAUCACUAAUCAUCCUAC...........  1         0.907
.......................................................AGGAAUCACUAAUCAUCCUAC...........  1         0.907
CGAGCGCCGUUGCAUGGAAGACUAGUGAUUUUGUUGUUCUACUUUCGAUAUAACAAGGAAUCACUAAUCAUCCUACAAAGGCGCUCG
((((((((.(((...(((.((.(((((((((((((((((.......)).))))))..))))))))).)).)))..))).)))))))) (-37.20)

miRBase

Deep sequencing reads for stem-loop sequence MI0001594

Filter reads

References

References
1	PMID:20807255 "Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera" Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F Insect Mol Biol. 19:799-805(2010).