Deep sequencing reads for stem-loop sequence MI0001649

Stem-loop ID mmu-mir-449a
Reads 
              mmu-miR-449a-5p                         mmu-miR-449a-3p                         Count     RPM (mean number of reads per million)
...............UGGCAGUGUAUUGUUAGCUGGU......................................................  8822      918
...............UGGCAGUGUAUUGUUAGCUGG.......................................................  1215      84.5
...............UGGCAGUGUAUUGUUAGCU.........................................................  679       10.9
...............UGGCAGUGUAUUGUUAGCUGGUU.....................................................  508       36.2
...............UGGCAGUGUAUUGUUAGCUG........................................................  410       22.2
...............UGGCAGUGUAUUGUUAGC..........................................................  96        5.86
................GGCAGUGUAUUGUUAGCUGGU......................................................  40        7.44
................GGCAGUGUAUUGUUAGCUGGUU.....................................................  6         0.524
................GGCAGUGUAUUGUUAGCUG........................................................  1         0.146
................GGCAGUGUAUUGUUAGCUGG.......................................................  1         0.0893
................GGCAGUGUAUUGUUAGCU.........................................................  1         0.124
.................GCAGUGUAUUGUUAGCUGGU......................................................  16        2.13
.................GCAGUGUAUUGUUAGCUGG.......................................................  2         0.127
..................CAGUGUAUUGUUAGCUGGU......................................................  38        6.21
..................CAGUGUAUUGUUAGCUGGUU.....................................................  3         0.259
..................CAGUGUAUUGUUAGCUGG.......................................................  2         0.827
...................AGUGUAUUGUUAGCUGGU......................................................  102       17
...................AGUGUAUUGUUAGCUGG.......................................................  5         1.54
...................AGUGUAUUGUUAGCUGGUU.....................................................  1         0.124
....................GUGUAUUGUUAGCUGGU......................................................  88        13.1
....................GUGUAUUGUUAGCUGGUU.....................................................  6         0.38
....................GUGUAUUGUUAGCUGGUUG....................................................  3         0.00952
.......................................................CAGCUAACAUGCGACUGCUCUC..............  33        2.23
.......................................................CAGCUAACAUGCGACUGCUC................  8         0.0227
.......................................................CAGCUAACAUGCGACUGCUCU...............  5         0.179
.......................................................CAGCUAACAUGCGACUGC..................  2         0.137
.......................................................CAGCUAACAUGCGACUGCU.................  1         0.00329
.........................................................GCUAACAUGCGACUGCUCU...............  2         0.248
CUGUGUGUGAUGGCUUGGCAGUGUAUUGUUAGCUGGUUGAGUAUGUGAGCGGCACCAGCUAACAUGCGACUGCUCUCCUAUUGCACACACA
.((((((..((((...((((((((((.((((((((((...((......))...)))))))))))))).))))))...))))..)))))).. (-44.90)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000028 2ovary GEO : GSM510432 [ Chiang HR et al.]
ER0000000029 193ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000030 183ovary GEO : GSM510434 [ Chiang HR et al.]
ER0000000031 21ovary GEO : GSM510435 [ Chiang HR et al.]
ER0000000032 477testes GEO : GSM510436 [ Chiang HR et al.]
ER0000000033 1578testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 1981testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000035 300testes GEO : GSM510439 [ Chiang HR et al.]
ER0000000036 9brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 38brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 49brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 3brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 156brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 15whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 125whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 146whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 17whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 367whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 466whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 543whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 540whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 516whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 541whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 506whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 1638whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 122embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 553embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 766embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 77embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 2embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 5embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 4embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 1embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 3embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 14embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 12embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000216 14bone marrow GEO : GSM539835 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000217 19bone marrow GEO : GSM539836 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000218 4spleen GEO : GSM539837 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 2spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 8spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 6spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 2spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 1peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000227 20lymph nodes GEO : GSM539846 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000229 11bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000232 5peritoneal lavage GEO : GSM539851 strain: C57BL/6J, gender: male
ER0000000233 3peritoneal lavage GEO : GSM539852 strain: C57BL/6J, gender: male
ER0000000234 10bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000235 3bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 76spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000237 272thymus GEO : GSM539856
ER0000000238 12spleen GEO : GSM539857 strain: C57BL/6J, gender: male
ER0000000239 11spleen GEO : GSM539858 strain: C57BL/6J, gender: male
ER0000000240 86spleen GEO : GSM539859 strain: C57BL/6J, gender: male
ER0000000241 187lymph nodes/spleen GEO : GSM539860 strain: C57BL/6J, gender: male
ER0000000242 63lymph nodes/spleen GEO : GSM539861 strain: C57BL/6J, gender: male
ER0000000243 74lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000244 49spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000245 71lymph nodes/spleen GEO : GSM539864 strain: C57BL/6J, gender: male
ER0000000246 3lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 7 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 5 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000250 26brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 154lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000253 2kidney GEO : GSM539872 strain: C57BL/6J, gender: male
ER0000000254 33pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 5skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 11skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 16salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 555testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 61ovary GEO : GSM539878 strain: C57BL/6J, gender: female
ER0000000260 4spleen GEO : GSM539879 strain: BclXL transgenic BalbC, gender: male
ER0000000261 54lymph nodes GEO : GSM539880 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).