Deep sequencing reads for stem-loop sequence MI0005407

Stem-loop ID

ath-MIR852

Reads

                                                                                                                                           ath-miR852                                                            Count     RPM (mean number of reads per million)
....................................................AGAGCUAAGGCGCUUAUCUUCU......................................................................................................................................  3         20.6
....................................................AGAGCUAAGGCGCUUAUCUUC.......................................................................................................................................  1         8.67
......................................................AGCUAAGGCGCUUAUCUUCUU.....................................................................................................................................  1         8.67
.................................................................................................................................AUCAAAGAAGAUAAGCGCCUU..........................................................  1         8.67
.....................................................................................................................................AAGAAGAUAAGCGCCUUAGUU......................................................  1         8.67
......................................................................................................................................AGAAGAUAAGCGCCUUAGUUC.....................................................  2         11.8
........................................................................................................................................AAGAUAAGCGCCUUAGUUCUG...................................................  22        172
........................................................................................................................................AAGAUAAGCGCCUUAGUUCUGA..................................................  21        178
........................................................................................................................................AAGAUAAGCGCCUUAGUUC.....................................................  1         8.67
........................................................................................................................................AAGAUAAGCGCCUUAGUUCUGAAG................................................  1         6.73
........................................................................................................................................AAGAUAAGCGCCUUAGUUCUGAA.................................................  1         6.73
..........................................................................................................................................GAUAAGCGCCUUAGUUCUGA..................................................  2         17.3
UUUAUCCUAAACAUCCUAUUAAGUUUUUAUGCUGAAACAAAGCUCAAAGCUCAGAGCUAAGGCGCUUAUCUUCUUUGAUAUUGCAUGGAGUAUGCUUCUACUUCUCUAGGAGAUGCGUUUUAUGGAAAUAUCAAAGAAGAUAAGCGCCUUAGUUCUGAAGAUAAGCGCCUUAUUCACAAAAUGCAUAAGGUUGUAUUCUUUGUUAGGU
.....(((((............(((((......)))))......(((((.((((((((((((((((((((((((((((((((.((((((((((.((((((......))))))))))..))))))..))))))))))))))))))))))))))))))))......(((((((((.((.....)).)))))).)))...)))))))))). (-80.60)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000003	1	whole body	GEO : GSM253622		[ Mi S et al.]
ER0000000004	81	whole body	GEO : GSM253623		[ Mi S et al.]
ER0000000005	5	whole body	GEO : GSM253624		[ Mi S et al.]
ER0000000006	2	whole body	GEO : GSM253625		[ Mi S et al.]
ER0000000208	1	flower	GEO : GSM118372		[ Rajagopalan R et al.]
ER0000000209	3	rosette leaf	GEO : GSM118373		[ Rajagopalan R et al.]
ER0000000210	7	seedling	GEO : GSM118374		[ Rajagopalan R et al.]

References

1. PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
2. PMID:18342361 "Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide" Mi S, Cai T, Hu Y, Chen Y, Hodges E, Ni F, Wu L, Li S, Zhou H, Long C, Chen S, Hannon GJ, Qi Y. Cell. 133:116-127(2008).