Deep sequencing reads for stem-loop sequence MI0005408

Stem-loop ID ath-MIR853
Reads 
                                                     ath-miR853                                                                                                                                                                                                                                     Count     RPM (mean number of reads per million)
.................................................UCCCCUCUUUAGCUUGGAGAAG...........................................................................................................................................................................................................................  26        313
....................................................CCUCUUUAGCUUGGAGAAG...........................................................................................................................................................................................................................  1         7.08
.............................................................CUUGGAGAAGCCAGUAAAUAU................................................................................................................................................................................................................  1         0.103
...............................................................................................................................................................................................................................CUGCAACCGGAAAGGGGAGC...............................................  1         3.1
GAGAGGAACAAUUAGGGUUGUUUCAAACAGGGUAAAGUGUUCCUGCUGCUCCCCUCUUUAGCUUGGAGAAGCCAGUAAAUAUCUUUCUCUUCAAGGAACUUGUGGGCCUCAAGAAAACCUGCUAUAAUUCUAGUUUUUCAACAUUCCUCCUUCUGAUAUCAGCAACAACUCCUUACCCUUAAGAAUGGAGAAUGGAACUUCCUCAAAGAUAUUUACUUGGCCUCUGCAACCGGAAAGGGGAGCAGCAUGAAACUCUUUUAACCCUUACCCUGUAUUUGUCAAAAACAGAU
....((((((((....))))))))..((((((((((((.(((.((((((((((((.((..(.(((.(((.((((((((((((((((.......(((..(....)..)))...(((((...((((......)))))))))..(((((.(((..(((....))).........((((....))))...))))))))..........)))))))))))).)))).))).))))..)).)))))))))))).))))))..........))))))))).(((((.....))))). (-94.30)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000003 1whole body GEO : GSM253622 [ Mi S et al.]
ER0000000005 1whole body GEO : GSM253624 [ Mi S et al.]
ER0000000006 22whole body GEO : GSM253625 [ Mi S et al.]
ER0000000208 1flower GEO : GSM118372 [ Rajagopalan R et al.]
ER0000000209 1rosette leaf GEO : GSM118373 [ Rajagopalan R et al.]
ER0000000210 2seedling GEO : GSM118374 [ Rajagopalan R et al.]
ER0000000211 1silique GEO : GSM118375 [ Rajagopalan R et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
2
PMID:18342361 "Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide" Mi S, Cai T, Hu Y, Chen Y, Hodges E, Ni F, Wu L, Li S, Zhou H, Long C, Chen S, Hannon GJ, Qi Y. Cell. 133:116-127(2008).