Deep sequencing reads for stem-loop sequence MI0005814

Stem-loop ID dme-mir-959
Reads
                  dme-miR-959-5p                           dme-miR-959-3p                           Count     RPM (mean number of reads per million)
.................UCUUAGUACUCGGGUUGAUAA............................................................  38        3.05
.................UCUUAGUACUCGGGUUGAUAAA...........................................................  25        2.11
.................UCUUAGUACUCGGGUUGAUA.............................................................  21        1.48
.................UCUUAGUACUCGGGUUGAU..............................................................  4         0.304
.................UCUUAGUACUCGGGUUGA...............................................................  1         0.076
.................UCUUAGUACUCGGGUUGAUAAAG..........................................................  1         0.076
..................CUUAGUACUCGGGUUGAUAAAG..........................................................  398       37.3
..................CUUAGUACUCGGGUUGAUAAA...........................................................  180       22.1
..................CUUAGUACUCGGGUUGAUAA............................................................  98        8.73
..................CUUAGUACUCGGGUUGAUAAAGA.........................................................  38        5.71
..................CUUAGUACUCGGGUUGAUA.............................................................  35        5.58
..................CUUAGUACUCGGGUUGAU..............................................................  11        1.29
...................UUAGUACUCGGGUUGAUAAAG..........................................................  2424      189
...................UUAGUACUCGGGUUGAUAAAGA.........................................................  1496      124
...................UUAGUACUCGGGUUGAUAAA...........................................................  502       39.6
...................UUAGUACUCGGGUUGAUAA............................................................  229       17.7
...................UUAGUACUCGGGUUGAUA.............................................................  50        3.95
...................UUAGUACUCGGGUUGAU..............................................................  3         0.228
....................UAGUACUCGGGUUGAUAAAGA.........................................................  6         0.456
....................UAGUACUCGGGUUGAUAAAG..........................................................  6         0.456
....................UAGUACUCGGGUUGAUAAAGAC........................................................  1         0.0309
......................GUACUCGGGUUGAUAAAG..........................................................  1         0.076
.......................UACUCGGGUUGAUAAAG..........................................................  2         0.578
...........................................................UUUGUCAUCGGGGGUAUUAUG..................  910       69.5
...........................................................UUUGUCAUCGGGGGUAUUAUGA.................  670       53.6
...........................................................UUUGUCAUCGGGGGUAUUAU...................  124       9.17
...........................................................UUUGUCAUCGGGGGUAUUAUGAA................  68        7.83
...........................................................UUUGUCAUCGGGGGUAUUA....................  47        3.52
...........................................................UUUGUCAUCGGGGGUAUU.....................  28        2.18
...........................................................UUUGUCAUCGGGGGUAUUAUGAAA...............  4         2.57
............................................................UUGUCAUCGGGGGUAUUAUGA.................  3577      293
............................................................UUGUCAUCGGGGGUAUUAUG..................  2996      233
............................................................UUGUCAUCGGGGGUAUUAUGAA................  1294      130
............................................................UUGUCAUCGGGGGUAUUAU...................  268       20.4
............................................................UUGUCAUCGGGGGUAUUAUGAAA...............  98        15.4
............................................................UUGUCAUCGGGGGUAUUA....................  45        4.32
............................................................UUGUCAUCGGGGGUAUU.....................  8         0.608
............................................................UUGUCAUCGGGGGUAUUAUGAAAU..............  2         1.16
.............................................................UGUCAUCGGGGGUAUUAUGA.................  774       68.6
.............................................................UGUCAUCGGGGGUAUUAUG..................  664       50.9
.............................................................UGUCAUCGGGGGUAUUAUGAA................  349       34.8
.............................................................UGUCAUCGGGGGUAUUAUGAAA...............  281       30.9
.............................................................UGUCAUCGGGGGUAUUAU...................  28        2.13
.............................................................UGUCAUCGGGGGUAUUA....................  1         0.076
...............................................................UCAUCGGGGGUAUUAUG..................  2         0.152
...............................................................UCAUCGGGGGUAUUAUGAA................  1         0.131
...............................................................UCAUCGGGGGUAUUAUGA.................  1         0.076
................................................................CAUCGGGGGUAUUAUGAA................  1         0.076
UUAACUUUGUUCUAUAUUCUUAGUACUCGGGUUGAUAAAGACCUUUUCUUCAGGGAGCCUUUGUCAUCGGGGGUAUUAUGAAAUAUAGUUUAAAGAAA
....(((((..((((((((.((((((((..(.((((((((.((((......))))...)))))))).)..)))))))).).)))))))..)))))... (-29.20)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000010 2head GEO : GSM240749 [ Chung WJ et al.]
ER0000000011 5S2 cell GEO : GSM272651 [ Chung WJ et al.]
ER0000000014 455imaginal disc GEO : GSM275691 [ Chung WJ et al.]
ER0000000015 3head GEO : GSM286601 [ Chung WJ et al.]
ER0000000016 57whole body GEO : GSM286602 [ Chung WJ et al.]
ER0000000017 3whole body GEO : GSM286603 [ Chung WJ et al.]
ER0000000018 119embryo GEO : GSM286604 [ Chung WJ et al.]
ER0000000019 8embryo GEO : GSM286605 [ Chung WJ et al.]
ER0000000020 3embryo GEO : GSM286606 [ Chung WJ et al.]
ER0000000022 1embryo GEO : GSM286611 [ Chung WJ et al.]
ER0000000079 22whole body GEO : GSM322208 3rd instar larvae
ER0000000080 47whole body GEO : GSM322219 2-4 day old pupae
ER0000000081 7whole body GEO : GSM322245 3rd instar larvae
ER0000000082 5whole body GEO : GSM322338 2-4 day old pupae
ER0000000083 13head GEO : GSM322533 adult female head
ER0000000084 23head GEO : GSM322543 adult male head
ER0000000085 1whole body GEO : GSM360256 1st instar larvae
ER0000000087 14whole body GEO : GSM360260 0-1 day old pupae
ER0000000088 29whole body GEO : GSM360262 0-2 day old pupae
ER0000000089 1embryo GEO : GSM364902 12-24hr embryo
ER0000000090 5whole body GEO : GSM280082 from 2-4 day old flies
ER0000000091 4whole body GEO : GSM280083 from 2-4 day old flies
ER0000000092 3whole body GEO : GSM280084 from 2-4 day old flies
ER0000000093 16062whole body GEO : GSM280085 from 2-4 day old flies
ER0000000094 36whole body GEO : GSM280086 from 2-4 day old flies
ER0000000096 1S2 cell GEO : GSM280088
ER0000000099 690imaginal disc GEO : GSM399105 imaginal disc/brain
ER0000000100 14whole body GEO : GSM399106 female body
ER0000000101 386whole body GEO : GSM399107 male body
ER0000000102 2S2 cell GEO : GSM371638
ER0000000116 9whole body GEO : GSM180329 adult bodies (female bodies, male bodies) [ Ruby JG et al.]
ER0000000121 1whole body GEO : GSM180334 larvae: 1st instar and 3rd instars [ Ruby JG et al.]
ER0000000122 76imaginal disc GEO : GSM180335 [ Ruby JG et al.]
ER0000000123 2whole body GEO : GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day [ Ruby JG et al.]
ER0000000127 3ovary GEO : GSM385744 Ovary Somatic Sheet (OSS) cells
ER0000000128 16ovary GEO : GSM385748 Ovary Somatic Sheet (OSS) cells
ER0000000129 22ovary GEO : GSM385821 Ovary Somatic Sheet (OSS) cells
ER0000000130 6ovary GEO : GSM385822 Ovary Somatic Sheet (OSS) cells
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2
PMID:18501606 "Endogenous RNA interference provides a somatic defense against Drosophila transposons" Chung WJ, Okamura K, Martin R, Lai EC Curr Biol. 18:795-802(2008).