Deep sequencing reads for stem-loop sequence MI0010964

Stem-loop ID

cel-mir-2214

Reads

cel-miR-2214-5p                          cel-miR-2214-3p            Count     RPM (mean number of reads per million)
AUUCGGUCCGGAGUCAAUGGGUUAUC......................................  6         13.3
AUUCGGUCCGGAGUCAAUGGGU..........................................  4         6.1
AUUCGGUCCGGAGUCAAUGGGUUAU.......................................  3         6.84
AUUCGGUCCGGAGUCAAUGG............................................  1         1.27
AUUCGGUCCGGAGUCAAUG.............................................  1         2.28
AUUCGGUCCGGAGUCAAUGGGUUA........................................  1         2.28
AUUCGGUCCGGAGUCAA...............................................  1         2.28
AUUCGGUCCGGAGUCAAUGGG...........................................  1         2.28
.UUCGGUCCGGAGUCAAUGGGUUAUC......................................  3         5.83
.UUCGGUCCGGAGUCAAUGGG...........................................  2         2.55
.UUCGGUCCGGAGUCAAUGGGUUAUCU.....................................  1         1.27
.UUCGGUCCGGAGUCAAUGG............................................  1         1.27
.UUCGGUCCGGAGUCAAUGGGU..........................................  1         1.27
..UCGGUCCGGAGUCAAUGGGUUAUC......................................  2         4.56
..UCGGUCCGGAGUCAAUGGGU..........................................  2         2.55
..UCGGUCCGGAGUCAAUGGGUUA........................................  1         2.28
..UCGGUCCGGAGUCAAUGGG...........................................  1         1.27
...CGGUCCGGAGUCAAUGGGU..........................................  6         13.7
...CGGUCCGGAGUCAAUGGGUUAUC......................................  4         8.11
...CGGUCCGGAGUCAAUGGG...........................................  2         2.55
...CGGUCCGGAGUCAAUGGGUUA........................................  1         1.27
....GGUCCGGAGUCAAUGGGUUAUC......................................  1         1.27
....GGUCCGGAGUCAAUGGGUUAUCU.....................................  1         2.28
....GGUCCGGAGUCAAUGGGU..........................................  1         1.27
....GGUCCGGAGUCAAUGGG...........................................  1         1.27
....GGUCCGGAGUCAAUGGGUU.........................................  1         1.27
.....GUCCGGAGUCAAUGGGUU.........................................  2         4.56
......UCCGGAGUCAAUGGGUUAUC......................................  12        27
......UCCGGAGUCAAUGGGUUA........................................  2         2.55
......UCCGGAGUCAAUGGGUUAUCUUU...................................  1         2.28
......UCCGGAGUCAAUGGGUUAUCUU....................................  1         2.28
.......CCGGAGUCAAUGGGUUAUC......................................  10        19.8
.........GGAGUCAAUGGGUUAUCU.....................................  1         2.28
............................UCAAAACCCCCCAUUGACA.................  1         1.27
..............................AAAACCCCCCAUUGACA.................  1         1.27
.................................ACCCCCCAUUGACAACAACUUGA........  3         5.11
.................................ACCCCCCAUUGACAACAACUUGACCGGC...  2         3.55
.................................ACCCCCCAUUGACAACAACUUGACCGGCG..  2         4.56
..................................CCCCCCAUUGACAACAACUUGACCGGCG..  3         4.11
..................................CCCCCCAUUGACAACAACUUGACCGGC...  1         2.28
...................................CCCCCAUUGACAACAACUUGACCGGCG..  7         12.5
...................................CCCCCAUUGACAACAACUUGACCGGC...  2         2.83
...................................CCCCCAUUGACAACAACUUGACCGGCGUU  2         1.11
...................................CCCCCAUUGACAACAACUUGA........  1         2.28
...................................CCCCCAUUGACAACAACUUGACCGG....  1         2.28
...................................CCCCCAUUGACAACAACUUGACCGGCGU.  1         2.28
....................................CCCCAUUGACAACAACUUGACCGGCG..  2         2.83
......................................CCAUUGACAACAACUUGACCGGCGU.  2         4.56
......................................CCAUUGACAACAACUUGACCGGCG..  1         1.89
.......................................CAUUGACAACAACUUGACCGGCG..  11        22
.......................................CAUUGACAACAACUUGACCGGCGU.  2         4.56
.......................................CAUUGACAACAACUUGA........  1         2.28
........................................AUUGACAACAACUUGACCGGCG..  3         6.84
........................................AUUGACAACAACUUGACCGGCGU.  2         4.56
.........................................UUGACAACAACUUGACCGGCG..  2         3.55
..........................................UGACAACAACUUGACCGGCGUU  1         0.556
...........................................GACAACAACUUGACCGGCGU.  1         1.27
...........................................GACAACAACUUGACCGGCGUU  1         0.556
.............................................CAACAACUUGACCGGCG..  3         4.72
..............................................AACAACUUGACCGGCGUU  1         1.27
...............................................ACAACUUGACCGGCGUU  4         7.44
AUUCGGUCCGGAGUCAAUGGGUUAUCUUUCAAAACCCCCCAUUGACAACAACUUGACCGGCGUU
..((((((.((.(((((((((................))))))))).....)).)))))).... (-20.39)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000203	1	adult	GEO : GSM604032	strain: N2 wild-type, age: Day 0	[ de Lencastre A et al.]
ER0000000204	89	adult	GEO : GSM604033	strain: N2 wild-type, age: Day 10	[ de Lencastre A et al.]
ER0000000205	10	adult	GEO : GSM604034	strain: daf-2(e1379) mutant, age: Day 0	[ de Lencastre A et al.]
ER0000000206	38	adult	GEO : GSM604035	strain: daf-2(e1379) mutant, age: Day 10	[ de Lencastre A et al.]
ER0000000212	15	whole body	GEO : GSM139137	mixed-stage	[ Ruby JG et al.]

References

1. PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
2. PMID:21129974 "MicroRNAs both promote and antagonize longevity in C. elegans" de Lencastre A, Pincus Z, Zhou K, Kato M, Lee SS, Slack FJ Curr Biol. 20:2159-2168(2010).