Deep sequencing reads for stem-loop sequence MI0011129

Stem-loop ID ppc-mir-42a
Reads
                                                                         ppc-miR-42a                       Count     RPM (mean number of reads per million)
......................................................................UCACCGGGUGAACAUCCAUUGC.............  5         546
......................................................................UCACCGGGUGAACAUCCAUUG..............  2         218
GUGCAUUCAGUGCAGCCCGCAGUGGGUGUCUGCCUCGGUCUGAAGUGUGAGAUGCAUGAUCCUCCGUUCUUCACCGGGUGAACAUCCAUUGCGGGCGCAUGCACC
(((((.....(((.(((((((((((((((..(((.((((..((((...(((..........)))....)))))))))))..))))))))))))))))))))))). (-54.20)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000027 43whole body GEO : GSM378787 [ de Wit E et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).