Deep sequencing reads for stem-loop sequence MI0014057

Stem-loop ID mmu-mir-466c-2
Reads 
             mmu-miR-466c-5p                         mmu-miR-466c-3p                         Count     RPM (mean number of reads per million)
.............UGAUGUGUGUGUGCAUGUACAUAU.....................................................  473       10.2
.............UGAUGUGUGUGUGCAUGUACAU.......................................................  396       9.96
.............UGAUGUGUGUGUGCAUGUACA........................................................  156       1.51
.............UGAUGUGUGUGUGCAUGUAC.........................................................  99        0.622
.............UGAUGUGUGUGUGCAUGUACAUA......................................................  61        0.83
.............UGAUGUGUGUGUGCAUGUA..........................................................  56        0.362
.............UGAUGUGUGUGUGCAUGU...........................................................  4         0.0473
.............UGAUGUGUGUGUGCAUGUACAUAUGU...................................................  3         0.0582
.............UGAUGUGUGUGUGCAUG............................................................  1         0.0112
..............GAUGUGUGUGUGCAUGUACAUAU.....................................................  258       7.04
..............GAUGUGUGUGUGCAUGUACAU.......................................................  181       3.44
..............GAUGUGUGUGUGCAUGUACA........................................................  32        0.895
..............GAUGUGUGUGUGCAUGUACAUA......................................................  32        0.43
..............GAUGUGUGUGUGCAUGUACAUAUGU...................................................  9         0.463
..............GAUGUGUGUGUGCAUGUAC.........................................................  6         0.0291
..............GAUGUGUGUGUGCAUGUACAUAUG....................................................  5         0.0488
..............GAUGUGUGUGUGCAUGUA..........................................................  2         0.675
...............AUGUGUGUGUGCAUGUACAU.......................................................  2         0.0137
...............AUGUGUGUGUGCAUGUACAUAU.....................................................  1         0.0112
................UGUGUGUGUGCAUGUACAUAU.....................................................  15        0.673
................UGUGUGUGUGCAUGUACAUA......................................................  5         0.056
................UGUGUGUGUGCAUGUACAU.......................................................  3         0.135
................UGUGUGUGUGCAUGUACA........................................................  3         0.0183
.................GUGUGUGUGCAUGUACAUAU.....................................................  7         0.185
..................UGUGUGUGCAUGUACAU.......................................................  3         0.0336
..................UGUGUGUGCAUGUACAUAU.....................................................  1         0.0393
...................GUGUGUGCAUGUACAUA......................................................  1         0.0109
....................UGUGUGCAUGUACAUAU.....................................................  1         0.0112
.................................................UACAUAUACAUACACGCACAC....................  1         0.0121
...................................................CAUAUACAUACACGCACACAUA.................  3         0.0161
...................................................CAUAUACAUACACGCACACAUAAG...............  1         0.00914
....................................................AUAUACAUACACGCACACAUA.................  4         0.0256
....................................................AUAUACAUACACGCACACAUAAGA..............  3         0.0382
....................................................AUAUACAUACACGCACACAUAA................  2         0.0152
....................................................AUAUACAUACACGCACACAU..................  1         0.00245
.....................................................UAUACAUACACGCACACAUAAGA..............  781       19.2
.....................................................UAUACAUACACGCACACAUAAG...............  358       11.4
.....................................................UAUACAUACACGCACACAUAA................  55        2.05
.....................................................UAUACAUACACGCACACAUA.................  50        2.23
.....................................................UAUACAUACACGCACACAU..................  27        0.649
.....................................................UAUACAUACACGCACACAUAAGAC.............  18        0.394
.....................................................UAUACAUACACGCACAC....................  8         0.763
......................................................AUACAUACACGCACACAUAAGA..............  815       22.8
......................................................AUACAUACACGCACACAUAAG...............  185       4.62
......................................................AUACAUACACGCACACAUAAGAC.............  101       3.31
......................................................AUACAUACACGCACACAUAA................  46        3.49
......................................................AUACAUACACGCACACAUA.................  10        0.263
......................................................AUACAUACACGCACACA...................  1         0.00245
......................................................AUACAUACACGCACACAUAAGACA............  1         0.0361
......................................................AUACAUACACGCACACAU..................  1         0.0121
.......................................................UACAUACACGCACACAUAAGA..............  71        1.43
.......................................................UACAUACACGCACACAUAAGAC.............  19        0.241
.......................................................UACAUACACGCACACAUAAG...............  10        0.118
.......................................................UACAUACACGCACACAUAAGACA............  5         0.0503
.......................................................UACAUACACGCACACAUAA................  2         0.132
........................................................ACAUACACGCACACAUAAGA..............  11        0.495
........................................................ACAUACACGCACACAUAAG...............  4         0.0459
........................................................ACAUACACGCACACAUAAGACA............  1         0.0393
.........................................................CAUACACGCACACAUAAGA..............  9         0.223
.........................................................CAUACACGCACACAUAAG...............  5         0.408
.........................................................CAUACACGCACACAUAA................  1         0.0112
..........................................................AUACACGCACACAUAAGA..............  23        0.447
..........................................................AUACACGCACACAUAAG...............  12        0.115
..........................................................AUACACGCACACAUAAGAC.............  1         0.00245
...........................................................UACACGCACACAUAAGA..............  24        1.03
...........................................................UACACGCACACAUAAGAC.............  5         0.0538
............................................................ACACGCACACAUAAGAC.............  49        0.784
............................................................ACACGCACACAUAAGACA............  2         0.0146
.............................................................CACGCACACAUAAGACA............  1         0.0361
UGUGUAUAUGUGUUGAUGUGUGUGUGCAUGUACAUAUGUGAAUAUGAUAUACAUAUACAUACACGCACACAUAAGACACAUAUGAGCACA
.(((((((((((((.(((((((((((.(((((..((((((.........))))))))))).)))))))))))..)))))))))..)))). (-37.80)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000029 8ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000030 6ovary GEO : GSM510434 [ Chiang HR et al.]
ER0000000032 38testes GEO : GSM510436 [ Chiang HR et al.]
ER0000000033 145testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 204testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000035 22testes GEO : GSM510439 [ Chiang HR et al.]
ER0000000036 40brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 140brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 180brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 25brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 914brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 4whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 14whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 24whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 6whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 47whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 88whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 91whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 88whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 87whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 74whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 84whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 483whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 104embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 244embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 494embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 70embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 556embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 940embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 1571embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 163embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 274embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 302embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 765embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000216 26bone marrow GEO : GSM539835 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000217 12bone marrow GEO : GSM539836 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000218 17spleen GEO : GSM539837 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000219 5spleen GEO : GSM539838 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000220 8spleen GEO : GSM539839 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 39spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 86spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 89spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 37spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 1peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000226 8spleen GEO : GSM539845 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000227 14lymph nodes GEO : GSM539846 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000228 4lymph nodes GEO : GSM539847 strain: IL-6 transgenic, gender: male, isolation: fluorescence activated cell sorting
ER0000000229 38bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000231 13bone marrow GEO : GSM539850 strain: C57BL/6J, gender: male
ER0000000232 108peritoneal lavage GEO : GSM539851 strain: C57BL/6J, gender: male
ER0000000233 14peritoneal lavage GEO : GSM539852 strain: C57BL/6J, gender: male
ER0000000234 6bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000235 19bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 7spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000237 66thymus GEO : GSM539856
ER0000000238 145spleen GEO : GSM539857 strain: C57BL/6J, gender: male
ER0000000239 112spleen GEO : GSM539858 strain: C57BL/6J, gender: male
ER0000000240 25spleen GEO : GSM539859 strain: C57BL/6J, gender: male
ER0000000241 26lymph nodes/spleen GEO : GSM539860 strain: C57BL/6J, gender: male
ER0000000242 35lymph nodes/spleen GEO : GSM539861 strain: C57BL/6J, gender: male
ER0000000243 166lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000244 295spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000245 47lymph nodes/spleen GEO : GSM539864 strain: C57BL/6J, gender: male
ER0000000246 206lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 738 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 27 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000250 7brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000253 2kidney GEO : GSM539872 strain: C57BL/6J, gender: male
ER0000000254 2pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 11skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 25skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 22salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 7testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 3ovary GEO : GSM539878 strain: C57BL/6J, gender: female
ER0000000260 28spleen GEO : GSM539879 strain: BclXL transgenic BalbC, gender: male
ER0000000261 13lymph nodes GEO : GSM539880 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).