Deep sequencing reads for stem-loop sequence MI0014398

Stem-loop ID

bmo-mir-3340

Reads

                                                  bmo-miR-3340             Count     RPM (mean number of reads per million)
.............................................GAUAUACGGAUGCGAUGACGAUCGGCU..  1         0.861
..............................................AUAUACGGAUGCGAUGACGAUCG.....  1         0.233
..............................................AUAUACGGAUGCGAUGACGA........  1         0.233
...............................................UAUACGGAUGCGAUGACGAUCGGCU..  1         0.861
.................................................UACGGAUGCGAUGACGAUCGG....  1         0.233
..................................................ACGGAUGCGAUGACGAUCGG....  3         1.33
..................................................ACGGAUGCGAUGACGAUCGGCU..  1         0.233
...................................................CGGAUGCGAUGACGAUCGGC...  5         2.42
GCAGUGUCUCGAGGUCACUGCUCCGGAGGGGUUUGUCAGGAGGGAGAUAUACGGAUGCGAUGACGAUCGGCUGG
.((((....(((.((((.(((((((.....((((.((....)).))))...)))).))).))))..))))))). (-22.80)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000268	16	whole body	GEO : GSM449725	5th-instar day-3 larvae	[ Liu S et al.]
ER0000000269	75	anterior silk glands	GEO : GSM449726	5th-instar day-3 larvae	[ Liu S et al.]
ER0000000270	36	posterior silk glands	GEO : GSM449727	5th-instar day-3 larvae	[ Liu S et al.]

References

1. PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).