miRNA Search Results

Deep sequencing reads for stem-loop sequence MI0016201
Stem-loop ID	ame-mir-279b
Reads	ame-miR-279b Count RPM (mean number of reads per million) ............AAUUUUAUACUCUUGUUAU................................................................................................ 1 0.907 ...........................UUAUUAGGGACGAAGUAUU................................................................................. 1 0.907 ................................AGGGACGAAGUAUUCAUCU............................................................................ 1 0.907 ...................................GACGAAGUAUUCAUCUAGU......................................................................... 14 12.7 ...................................GACGAAGUAUUCAUCUAGUG........................................................................ 8 7.25 ...................................GACGAAGUAUUCAUCUAGUGCAA..................................................................... 7 6.35 ...................................GACGAAGUAUUCAUCUAGUGCAAC.................................................................... 6 5.44 ...................................GACGAAGUAUUCAUCUAGUGCAACG................................................................... 4 3.63 ...................................GACGAAGUAUUCAUCUAGUGC....................................................................... 3 2.72 ...................................GACGAAGUAUUCAUCUAGUGCA...................................................................... 2 1.81 ...................................GACGAAGUAUUCAUCUAGUGCAACGUU................................................................. 1 0.907 ....................................ACGAAGUAUUCAUCUAGUGCAACGU.................................................................. 67 60.7 ....................................ACGAAGUAUUCAUCUAGUGCAAC.................................................................... 65 58.9 ....................................ACGAAGUAUUCAUCUAGUGC....................................................................... 20 18.1 ....................................ACGAAGUAUUCAUCUAGUGCAACG................................................................... 18 16.3 ....................................ACGAAGUAUUCAUCUAGUGCAA..................................................................... 17 15.4 ....................................ACGAAGUAUUCAUCUAGUGCAACGUU................................................................. 2 1.81 ....................................ACGAAGUAUUCAUCUAGUG........................................................................ 1 0.907 ....................................ACGAAGUAUUCAUCUAGUGCA...................................................................... 1 0.907 ..........................................UAUUCAUCUAGUGCAACGU.................................................................. 2 1.81 ........................................................AACGUUGUAAAGAAAUCGUGA.................................................. 1 0.907 .......................................................................UCGUGACUAGAUCGAAAUAC.................................... 1 0.907 .........................................................................GUGACUAGAUCGAAAUACU................................... 2 1.81 .........................................................................GUGACUAGAUCGAAAUACUCGU................................ 1 0.907 .........................................................................GUGACUAGAUCGAAAUACUC.................................. 1 0.907 ..........................................................................UGACUAGAUCGAAAUACUCGUCCCU............................ 2713 2.46e+03 ..........................................................................UGACUAGAUCGAAAUACUCG................................. 2332 2.11e+03 ..........................................................................UGACUAGAUCGAAAUACUCGUCC.............................. 1250 1.13e+03 ..........................................................................UGACUAGAUCGAAAUACUCGUCCCUA........................... 680 616 ..........................................................................UGACUAGAUCGAAAUACUCGUC............................... 610 553 ..........................................................................UGACUAGAUCGAAAUACUCGU................................ 593 538 ..........................................................................UGACUAGAUCGAAAUACUCGUCCC............................. 366 332 ..........................................................................UGACUAGAUCGAAAUACUC.................................. 160 145 ..........................................................................UGACUAGAUCGAAAUACUCGUCCCUAA.......................... 20 18.1 ..........................................................................UGACUAGAUCGAAAUACUCGUCCCUAAU......................... 13 11.8 ...........................................................................GACUAGAUCGAAAUACUCGUCCCUA........................... 26 23.6 ...........................................................................GACUAGAUCGAAAUACUCGUCCCU............................ 14 12.7 ...........................................................................GACUAGAUCGAAAUACUCGUCCCUAA.......................... 7 6.35 ...........................................................................GACUAGAUCGAAAUACUCG................................. 6 5.44 ...........................................................................GACUAGAUCGAAAUACUCGUCC.............................. 6 5.44 ...........................................................................GACUAGAUCGAAAUACUCGUC............................... 5 4.53 ...........................................................................GACUAGAUCGAAAUACUCGU................................ 4 3.63 ...........................................................................GACUAGAUCGAAAUACUCGUCCC............................. 2 1.81 ..............................................................................UAGAUCGAAAUACUCGUCCCU............................ 1 0.907 ..............................................................................UAGAUCGAAAUACUCGUCC.............................. 1 0.907 .................................................................................AUCGAAAUACUCGUCCCUA........................... 1 0.907 ....................................................................................................AUAGAGAGAAUCAAUAAUC........ 1 0.907 AAAUGUUUGUGAAAUUUUAUACUCUUGUUAUUAGGGACGAAGUAUUCAUCUAGUGCAACGUUGUAAAGAAAUCGUGACUAGAUCGAAAUACUCGUCCCUAAUAGAGAGAAUCAAUAAUCAUCAACAA ...((((.((((...((.((.(((((..((((((((((((.(((((((((((((...(((............))).))))))).).)))))))))))))))))))))).)).))...)))).)))). (-41.60)

                                                                             ame-miR-279b                                        Count     RPM (mean number of reads per million)
............AAUUUUAUACUCUUGUUAU................................................................................................  1         0.907
...........................UUAUUAGGGACGAAGUAUU.................................................................................  1         0.907
................................AGGGACGAAGUAUUCAUCU............................................................................  1         0.907
...................................GACGAAGUAUUCAUCUAGU.........................................................................  14        12.7
...................................GACGAAGUAUUCAUCUAGUG........................................................................  8         7.25
...................................GACGAAGUAUUCAUCUAGUGCAA.....................................................................  7         6.35
...................................GACGAAGUAUUCAUCUAGUGCAAC....................................................................  6         5.44
...................................GACGAAGUAUUCAUCUAGUGCAACG...................................................................  4         3.63
...................................GACGAAGUAUUCAUCUAGUGC.......................................................................  3         2.72
...................................GACGAAGUAUUCAUCUAGUGCA......................................................................  2         1.81
...................................GACGAAGUAUUCAUCUAGUGCAACGUU.................................................................  1         0.907
....................................ACGAAGUAUUCAUCUAGUGCAACGU..................................................................  67        60.7
....................................ACGAAGUAUUCAUCUAGUGCAAC....................................................................  65        58.9
....................................ACGAAGUAUUCAUCUAGUGC.......................................................................  20        18.1
....................................ACGAAGUAUUCAUCUAGUGCAACG...................................................................  18        16.3
....................................ACGAAGUAUUCAUCUAGUGCAA.....................................................................  17        15.4
....................................ACGAAGUAUUCAUCUAGUGCAACGUU.................................................................  2         1.81
....................................ACGAAGUAUUCAUCUAGUG........................................................................  1         0.907
....................................ACGAAGUAUUCAUCUAGUGCA......................................................................  1         0.907
..........................................UAUUCAUCUAGUGCAACGU..................................................................  2         1.81
........................................................AACGUUGUAAAGAAAUCGUGA..................................................  1         0.907
.......................................................................UCGUGACUAGAUCGAAAUAC....................................  1         0.907
.........................................................................GUGACUAGAUCGAAAUACU...................................  2         1.81
.........................................................................GUGACUAGAUCGAAAUACUCGU................................  1         0.907
.........................................................................GUGACUAGAUCGAAAUACUC..................................  1         0.907
..........................................................................UGACUAGAUCGAAAUACUCGUCCCU............................  2713      2.46e+03
..........................................................................UGACUAGAUCGAAAUACUCG.................................  2332      2.11e+03
..........................................................................UGACUAGAUCGAAAUACUCGUCC..............................  1250      1.13e+03
..........................................................................UGACUAGAUCGAAAUACUCGUCCCUA...........................  680       616
..........................................................................UGACUAGAUCGAAAUACUCGUC...............................  610       553
..........................................................................UGACUAGAUCGAAAUACUCGU................................  593       538
..........................................................................UGACUAGAUCGAAAUACUCGUCCC.............................  366       332
..........................................................................UGACUAGAUCGAAAUACUC..................................  160       145
..........................................................................UGACUAGAUCGAAAUACUCGUCCCUAA..........................  20        18.1
..........................................................................UGACUAGAUCGAAAUACUCGUCCCUAAU.........................  13        11.8
...........................................................................GACUAGAUCGAAAUACUCGUCCCUA...........................  26        23.6
...........................................................................GACUAGAUCGAAAUACUCGUCCCU............................  14        12.7
...........................................................................GACUAGAUCGAAAUACUCGUCCCUAA..........................  7         6.35
...........................................................................GACUAGAUCGAAAUACUCG.................................  6         5.44
...........................................................................GACUAGAUCGAAAUACUCGUCC..............................  6         5.44
...........................................................................GACUAGAUCGAAAUACUCGUC...............................  5         4.53
...........................................................................GACUAGAUCGAAAUACUCGU................................  4         3.63
...........................................................................GACUAGAUCGAAAUACUCGUCCC.............................  2         1.81
..............................................................................UAGAUCGAAAUACUCGUCCCU............................  1         0.907
..............................................................................UAGAUCGAAAUACUCGUCC..............................  1         0.907
.................................................................................AUCGAAAUACUCGUCCCUA...........................  1         0.907
....................................................................................................AUAGAGAGAAUCAAUAAUC........  1         0.907
AAAUGUUUGUGAAAUUUUAUACUCUUGUUAUUAGGGACGAAGUAUUCAUCUAGUGCAACGUUGUAAAGAAAUCGUGACUAGAUCGAAAUACUCGUCCCUAAUAGAGAGAAUCAAUAAUCAUCAACAA
...((((.((((...((.((.(((((..((((((((((((.(((((((((((((...(((............))).))))))).).)))))))))))))))))))))).)).))...)))).)))). (-41.60)

miRBase

Deep sequencing reads for stem-loop sequence MI0016201

Filter reads

References

References
1	PMID:20807255 "Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera" Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F Insect Mol Biol. 19:799-805(2010).