Deep sequencing reads for stem-loop sequence MI0016306

Stem-loop ID tca-mir-2944a
Reads
               tca-miR-2944a-5p                   tca-miR-2944a-3p                          Count     RPM (mean number of reads per million)
......CUGAAACUGUGGAGGAAC.................................................................  4         0.516
.................GAGGAACUAUUGGUGUGAUUUG..................................................  48        6.19
.................GAGGAACUAUUGGUGUGAUU....................................................  6         0.774
.................GAGGAACUAUUGGUGUGAUUUGU.................................................  4         0.516
.................GAGGAACUAUUGGUGUGAUUU...................................................  4         8.76
.................GAGGAACUAUUGGUGUGA......................................................  4         0.516
.................GAGGAACUAUUGGUGUGAU.....................................................  2         0.258
..................AGGAACUAUUGGUGUGAUUUG..................................................  2         0.258
.......................................UUCAUUUAAUCAUAUCACAGCCAUUA........................  2         0.258
..................................................AUAUCACAGCCAUUAGUUACU..................  2         0.258
..................................................AUAUCACAGCCAUUAGUUACUUCAC..............  2         0.258
...................................................UAUCACAGCCAUUAGUUACUUCAC..............  3430      492
...................................................UAUCACAGCCAUUAGUUAC...................  956       206
...................................................UAUCACAGCCAUUAGUUA....................  860       160
...................................................UAUCACAGCCAUUAGUUACU..................  594       291
...................................................UAUCACAGCCAUUAGUUACUUC................  436       97.4
...................................................UAUCACAGCCAUUAGUUACUU.................  346       69.4
...................................................UAUCACAGCCAUUAGUUACUUCA...............  196       25.3
...................................................UAUCACAGCCAUUAGUUACUUCACA.............  12        9.79
....................................................AUCACAGCCAUUAGUUACUUCAC..............  182       23.5
....................................................AUCACAGCCAUUAGUUAC...................  96        12.4
....................................................AUCACAGCCAUUAGUUACUUC................  36        4.64
....................................................AUCACAGCCAUUAGUUACU..................  32        20.6
....................................................AUCACAGCCAUUAGUUACUU.................  28        20.1
....................................................AUCACAGCCAUUAGUUACUUCA...............  10        1.29
.....................................................UCACAGCCAUUAGUUACUUCAC..............  8         1.03
.....................................................UCACAGCCAUUAGUUACUUCACA.............  2         0.258
......................................................CACAGCCAUUAGUUACUUCAC..............  4         0.516
......................................................CACAGCCAUUAGUUACUUCA...............  2         0.258
.......................................................ACAGCCAUUAGUUACUUCAC..............  10        1.29
AACUCGCUGAAACUGUGGAGGAACUAUUGGUGUGAUUUGUUCAUUUAAUCAUAUCACAGCCAUUAGUUACUUCACAGUUUCAGUAUUUU
.....(((((((((((((((.(((((.(((((((((.((..........)).)))))).))).))))).)))))))))))))))..... (-40.50)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000199 20670adult GEO : GSM639446 genotype: wild type, gender: male and female [ Marco A et al.]
ER0000000200 250embryo GEO : GSM639447 genotype: wild type, age: 0-5 days, gender: male and female [ Marco A et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).