Deep sequencing reads for stem-loop sequence MI0016375

Stem-loop ID

tca-mir-11

Reads

                           tca-miR-11-5p                       tca-miR-11-3p                                 Count     RPM (mean number of reads per million)
..........................UGGGAUUCUGACUGUGACCUGU..........................................................  34        20.9
..........................UGGGAUUCUGACUGUGACCUG...........................................................  16        10.3
..........................UGGGAUUCUGACUGUGACC.............................................................  12        1.55
..........................UGGGAUUCUGACUGUGACCU............................................................  12        9.79
..........................UGGGAUUCUGACUGUGAC..............................................................  12        9.79
..........................UGGGAUUCUGACUGUGACCUGUGU........................................................  2         0.258
..........................UGGGAUUCUGACUGUGACCUGUGUG.......................................................  2         0.258
..........................UGGGAUUCUGACUGUGACCUGUGUGU......................................................  2         0.258
.............................................................ACAUCACAGGCAGAGUUCUAGC.......................  10        1.29
.............................................................ACAUCACAGGCAGAGUUC...........................  8         1.03
.............................................................ACAUCACAGGCAGAGUUCU..........................  8         17.5
.............................................................ACAUCACAGGCAGAGUUCUAGCU......................  6         0.774
.............................................................ACAUCACAGGCAGAGUUCUA.........................  4         0.516
..............................................................CAUCACAGGCAGAGUUCUAGCU......................  1292      191
..............................................................CAUCACAGGCAGAGUUCUAGC.......................  636       115
..............................................................CAUCACAGGCAGAGUUCU..........................  560       138
..............................................................CAUCACAGGCAGAGUUCUA.........................  288       111
..............................................................CAUCACAGGCAGAGUUCUAG........................  260       58.3
..............................................................CAUCACAGGCAGAGUUCUAGCUA.....................  112       39.2
..............................................................CAUCACAGGCAGAGUUCUAGCUAU....................  24        19.6
..............................................................CAUCACAGGCAGAGUUCUAGCUAUGC..................  2         0.258
...............................................................AUCACAGGCAGAGUUCUAGCU......................  2         0.258
................................................................UCACAGGCAGAGUUCUAGC.......................  2         0.258
..................................................................ACAGGCAGAGUUCUAGCU......................  8         1.03
CAAACGCUUACAUUGUAAAUGCAUUCUGGGAUUCUGACUGUGACCUGUGUGUGUCUGAUUCACAUCACAGGCAGAGUUCUAGCUAUGCGUUUACAGCUUGCUUCUC
.....((.....((((((((((((.(((((((((((.((((((..((((.((.....)).)))))))))).)))))))))))..))))))))))))...))..... (-42.00)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000199	5948	adult	GEO : GSM639446	genotype: wild type, gender: male and female	[ Marco A et al.]
ER0000000200	166	embryo	GEO : GSM639447	genotype: wild type, age: 0-5 days, gender: male and female	[ Marco A et al.]

References

1. PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).