Deep sequencing reads for stem-loop sequence MI0018040

Stem-loop ID mmu-mir-5128
Reads 
                                                    mmu-miR-5128                     Count     RPM (mean number of reads per million)
.............GGUCUUUCUAGCUCCUGUUU...................................................  2         0.0211
.............GGUCUUUCUAGCUCCUGUUUUACUAAUU...........................................  1         0.0296
................................................UGCAAUUGGGGCUGGCGAGAUGG.............  2         0.00673
................................................UGCAAUUGGGGCUGGCGAGAUGGCU...........  1         0.00116
................................................UGCAAUUGGGGCUGGCGAGAUG..............  1         0.0101
.................................................GCAAUUGGGGCUGGCGAGAUGG.............  5         0.024
.................................................GCAAUUGGGGCUGGCGAGAUGGC............  5         0.02
.................................................GCAAUUGGGGCUGGCGAGAUGGCU...........  3         0.0189
.................................................GCAAUUGGGGCUGGCGAGAUG..............  2         0.00631
.................................................GCAAUUGGGGCUGGCGAGAUGGCUUA.........  1         0.00336
.................................................GCAAUUGGGGCUGGCGAGAU...............  1         0.00637
.................................................GCAAUUGGGGCUGGCGAGAUGGCUU..........  1         0.00581
..................................................CAAUUGGGGCUGGCGAGAUGG.............  501       2.33
..................................................CAAUUGGGGCUGGCGAGAUGGCU...........  360       1.59
..................................................CAAUUGGGGCUGGCGAGAUGGC............  283       1.28
..................................................CAAUUGGGGCUGGCGAGAUG..............  184       0.936
..................................................CAAUUGGGGCUGGCGAGAU...............  180       0.932
..................................................CAAUUGGGGCUGGCGAGAUGGCUU..........  50        0.185
..................................................CAAUUGGGGCUGGCGAGA................  9         0.0639
..................................................CAAUUGGGGCUGGCGAGAUGGCUUA.........  6         0.0285
..................................................CAAUUGGGGCUGGCGAGAUGGCUUAGU.......  1         0.00581
...................................................AAUUGGGGCUGGCGAGAUGGCU...........  396       1.64
...................................................AAUUGGGGCUGGCGAGAUGGCUU..........  381       1.43
...................................................AAUUGGGGCUGGCGAGAUGG.............  291       1.33
...................................................AAUUGGGGCUGGCGAGAUGGC............  129       0.486
...................................................AAUUGGGGCUGGCGAGAUG..............  125       0.658
...................................................AAUUGGGGCUGGCGAGAUGGCUUA.........  82        0.357
...................................................AAUUGGGGCUGGCGAGAUGGCUUAG........  4         0.0245
....................................................AUUGGGGCUGGCGAGAUGGCUU..........  1         0.00338
.....................................................UUGGGGCUGGCGAGAUGGCUU..........  3         0.00888
.....................................................UUGGGGCUGGCGAGAUGGCUUA.........  1         0.00581
UCUUAAUUACUGAGGUCUUUCUAGCUCCUGUUUUACUAAUUUAAAAAGUGCAAUUGGGGCUGGCGAGAUGGCUUAGUGGUUAAG
.((((((((((((((((((.((((((((.(((.((((.........)))).))).)))))))).)))))..))))))))))))) (-34.10)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000029 2ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000032 2testes GEO : GSM510436 [ Chiang HR et al.]
ER0000000033 4testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 7testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000035 2testes GEO : GSM510439 [ Chiang HR et al.]
ER0000000038 1brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000040 4brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 2whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 7whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 8whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 3whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 3whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 8whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 10whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 13whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 14whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 17whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 12whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 145whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 5embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 16embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 9embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 2embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 9embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 40embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 26embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 3embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 8embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 11embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 10embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000216 342bone marrow GEO : GSM539835 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000217 229bone marrow GEO : GSM539836 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000218 119spleen GEO : GSM539837 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000219 63spleen GEO : GSM539838 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000220 78spleen GEO : GSM539839 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 95spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 153spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 208spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 139spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 15peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000226 18spleen GEO : GSM539845 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000227 332lymph nodes GEO : GSM539846 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000228 272lymph nodes GEO : GSM539847 strain: IL-6 transgenic, gender: male, isolation: fluorescence activated cell sorting
ER0000000229 4bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000230 8bone marrow GEO : GSM539849 strain: C57BL/6J, gender: male
ER0000000231 132bone marrow GEO : GSM539850 strain: C57BL/6J, gender: male
ER0000000232 9peritoneal lavage GEO : GSM539851 strain: C57BL/6J, gender: male
ER0000000234 2bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000235 4bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 52spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000237 38thymus GEO : GSM539856
ER0000000238 11spleen GEO : GSM539857 strain: C57BL/6J, gender: male
ER0000000239 4spleen GEO : GSM539858 strain: C57BL/6J, gender: male
ER0000000240 89spleen GEO : GSM539859 strain: C57BL/6J, gender: male
ER0000000241 94lymph nodes/spleen GEO : GSM539860 strain: C57BL/6J, gender: male
ER0000000242 376lymph nodes/spleen GEO : GSM539861 strain: C57BL/6J, gender: male
ER0000000243 47lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000244 167spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000245 10lymph nodes/spleen GEO : GSM539864 strain: C57BL/6J, gender: male
ER0000000246 18lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 246 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 32 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000250 10brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 2lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000252 2liver GEO : GSM539871 strain: C57BL/6J, gender: male
ER0000000253 13kidney GEO : GSM539872 strain: C57BL/6J, gender: male
ER0000000254 2pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 11skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 4skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 10salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 5testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 2ovary GEO : GSM539878 strain: C57BL/6J, gender: female
ER0000000260 141spleen GEO : GSM539879 strain: BclXL transgenic BalbC, gender: male
ER0000000261 380lymph nodes GEO : GSM539880 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).