Deep sequencing reads for stem-loop sequence MI0018055

Stem-loop ID

osa-MIR5143a

Reads

                                                                                                                                                                                osa-miR5143a                       Count     RPM (mean number of reads per million)
..........CCUCAUUGACCAAUAUACCACAAA...............................................................................................................................................................................  24        11.5
.............................................................................................................................................................................UGUGGUAUGUUGGCAAUGUAGGAA............  48        22.8
..................................................................................................................................................................................UAUGUUGGCAAUGUAGGAAGUCUGA......  25        11.8
..................................................................................................................................................................................UAUGUUGGCAAUGUAGGAAGUC.........  22        10.6
CCUCAUACUUCCUCAUUGACCAAUAUACCACAAAACACUACAAUGUUGGCCUCUUUACCACUAUCAAGACACUUCUCCCAGUCCAUUUUGUCUGUUGAGCAUCAGGACAUUAAUAAGUGUGGAGUGCCUUGCUCUACAUCAUCCUCUGUAAACAGUCUGGGGUUGCAGUUUUAUGUGGUAUGUUGGCAAUGUAGGAAGUCUGAAUCGUA
..(((.((((((((((((.(((((((((((((.((.(((.((((.(..(.((.(((((......................((((....((((....)).))...))))........(((((((((.....)))))))))........))))).)).)..).)))).))).)).)))))))))))))))))).))))))).)))...... (-71.30)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000201	71	whole body	GEO : GSM571077	strain: indica 93-11, age: 12-day-old, stress: control	[ Li T et al.]
ER0000000202	70	whole body	GEO : GSM571078	strain: indica 93-11, stress: H2O2	[ Li T et al.]

References

1. PMID:21113019 "Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)" Li T, Li H, Zhang YX, Liu JY Nucleic Acids Res. 39:2821-2833(2011).