miRNA Search Results

Deep sequencing reads for mature sequence MIMAT0000357
Stem-loop ID	dme-mir-100
Mature ID	dme-miR-100-5p
Reads	dme-miR-100-5p dme-miR-100-3p Count RPM (mean number of reads per million) ..........AAACCCGUAAAUCCGAACUUGUG................................................................... 37 1.82 ..........AAACCCGUAAAUCCGAACUUGU.................................................................... 22 0.434 ..........AAACCCGUAAAUCCGAACUUG..................................................................... 4 0.15 ...........AACCCGUAAAUCCGAACUUGUG................................................................... 3921 257 ...........AACCCGUAAAUCCGAACUUGU.................................................................... 671 31 ...........AACCCGUAAAUCCGAACUUG..................................................................... 44 1.65 ...........AACCCGUAAAUCCGAAC........................................................................ 8 0.0958 ...........AACCCGUAAAUCCGAACUUGUGC.................................................................. 5 0.798 ...........AACCCGUAAAUCCGAACUU...................................................................... 2 0.0972 ...........AACCCGUAAAUCCGAACU....................................................................... 2 0.123 ............ACCCGUAAAUCCGAACUUGUG................................................................... 140 6.06 ............ACCCGUAAAUCCGAACUUGU.................................................................... 9 0.661 ............ACCCGUAAAUCCGAACUUGUGC.................................................................. 4 0.103 .............CCCGUAAAUCCGAACUUGUG................................................................... 10 0.757 .............CCCGUAAAUCCGAACUUGU.................................................................... 4 0.103 ..............CCGUAAAUCCGAACUUGUG................................................................... 4 0.0297 ...............CGUAAAUCCGAACUUGUG................................................................... 2 0.146 .............................UGUGCUGUUUUAUAUCUGUUACAAGACCGG......................................... 1 0.00709 ..................................................CAAGACCGGCAUUAUGGGAGUC............................ 382 32.7 ..................................................CAAGACCGGCAUUAUGGGAGU............................. 72 7.34 ..................................................CAAGACCGGCAUUAUGGGAG.............................. 31 1.49 ..................................................CAAGACCGGCAUUAUGGGAGUCU........................... 3 0.0659 ..................................................CAAGACCGGCAUUAUGGG................................ 1 0.0202 ..................................................CAAGACCGGCAUUAUGGGA............................... 1 0.234 ...................................................AAGACCGGCAUUAUGGGAGUCU........................... 9 0.122 ...................................................AAGACCGGCAUUAUGGGAGU............................. 2 0.181 ....................................................AGACCGGCAUUAUGGGAGU............................. 1 0.234 .....................................................GACCGGCAUUAUGGGAGU............................. 1 0.0729 .....................................................GACCGGCAUUAUGGGAGUCUGU......................... 1 0.0202 ......................................................ACCGGCAUUAUGGGAGUC............................ 1 0.0446 .......................................................CCGGCAUUAUGGGAGUC............................ 1 0.234 CCAUUAACAGAAACCCGUAAAUCCGAACUUGUGCUGUUUUAUAUCUGUUACAAGACCGGCAUUAUGGGAGUCUGUCAAUGCAAACAACUGGUUUUUGGCA .((((.(((((..(((((((..(((..(((((((.(........).).))))))..)))..)))))))..))))).)))).................... (-27.10)

           dme-miR-100-5p                         dme-miR-100-3p                                       Count     RPM (mean number of reads per million)
..........AAACCCGUAAAUCCGAACUUGUG...................................................................  37        1.82
..........AAACCCGUAAAUCCGAACUUGU....................................................................  22        0.434
..........AAACCCGUAAAUCCGAACUUG.....................................................................  4         0.15
...........AACCCGUAAAUCCGAACUUGUG...................................................................  3921      257
...........AACCCGUAAAUCCGAACUUGU....................................................................  671       31
...........AACCCGUAAAUCCGAACUUG.....................................................................  44        1.65
...........AACCCGUAAAUCCGAAC........................................................................  8         0.0958
...........AACCCGUAAAUCCGAACUUGUGC..................................................................  5         0.798
...........AACCCGUAAAUCCGAACUU......................................................................  2         0.0972
...........AACCCGUAAAUCCGAACU.......................................................................  2         0.123
............ACCCGUAAAUCCGAACUUGUG...................................................................  140       6.06
............ACCCGUAAAUCCGAACUUGU....................................................................  9         0.661
............ACCCGUAAAUCCGAACUUGUGC..................................................................  4         0.103
.............CCCGUAAAUCCGAACUUGUG...................................................................  10        0.757
.............CCCGUAAAUCCGAACUUGU....................................................................  4         0.103
..............CCGUAAAUCCGAACUUGUG...................................................................  4         0.0297
...............CGUAAAUCCGAACUUGUG...................................................................  2         0.146
.............................UGUGCUGUUUUAUAUCUGUUACAAGACCGG.........................................  1         0.00709
..................................................CAAGACCGGCAUUAUGGGAGUC............................  382       32.7
..................................................CAAGACCGGCAUUAUGGGAGU.............................  72        7.34
..................................................CAAGACCGGCAUUAUGGGAG..............................  31        1.49
..................................................CAAGACCGGCAUUAUGGGAGUCU...........................  3         0.0659
..................................................CAAGACCGGCAUUAUGGG................................  1         0.0202
..................................................CAAGACCGGCAUUAUGGGA...............................  1         0.234
...................................................AAGACCGGCAUUAUGGGAGUCU...........................  9         0.122
...................................................AAGACCGGCAUUAUGGGAGU.............................  2         0.181
....................................................AGACCGGCAUUAUGGGAGU.............................  1         0.234
.....................................................GACCGGCAUUAUGGGAGU.............................  1         0.0729
.....................................................GACCGGCAUUAUGGGAGUCUGU.........................  1         0.0202
......................................................ACCGGCAUUAUGGGAGUC............................  1         0.0446
.......................................................CCGGCAUUAUGGGAGUC............................  1         0.234
CCAUUAACAGAAACCCGUAAAUCCGAACUUGUGCUGUUUUAUAUCUGUUACAAGACCGGCAUUAUGGGAGUCUGUCAAUGCAAACAACUGGUUUUUGGCA
.((((.(((((..(((((((..(((..(((((((.(........).).))))))..)))..)))))))..))))).)))).................... (-27.10)

miRBase

Deep sequencing reads for mature sequence MIMAT0000357

Filter reads

References

References
1	PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2	PMID:18501606 "Endogenous RNA interference provides a somatic defense against Drosophila transposons" Chung WJ, Okamura K, Martin R, Lai EC Curr Biol. 18:795-802(2008).