Deep sequencing reads for mature sequence MIMAT0000404

Stem-loop ID dme-mir-312
Mature ID dme-miR-312-3p
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?
Reads
    dme-miR-312-5p                       dme-miR-312-3p             Count     RPM (mean number of reads per million)
....UGGUUCGUCACAAGGGCAAUUCU.......................................  2514      265
....UGGUUCGUCACAAGGGCAAUUC........................................  1143      142
....UGGUUCGUCACAAGGGCAAUU.........................................  418       40
....UGGUUCGUCACAAGGGCAAU..........................................  156       14.4
....UGGUUCGUCACAAGGGCAA...........................................  51        4.81
....UGGUUCGUCACAAGGGCA............................................  13        1.1
....UGGUUCGUCACAAGGGC.............................................  7         0.543
....UGGUUCGUCACAAGGGCAAUUCUGC.....................................  2         0.184
....UGGUUCGUCACAAGGGCAAUUCUG......................................  1         0.14
.....GGUUCGUCACAAGGGCAAUUCU.......................................  9         0.457
.....GGUUCGUCACAAGGGCAAUUC........................................  2         0.457
.......UUCGUCACAAGGGCAAUUCU.......................................  4         0.208
.......UUCGUCACAAGGGCAAUUC........................................  2         0.304
.......UUCGUCACAAGGGCAAUU.........................................  1         0.0542
........UCGUCACAAGGGCAAUUCU.......................................  2         0.304
........UCGUCACAAGGGCAAUUC........................................  1         0.229
.........CGUCACAAGGGCAAUUCU.......................................  1         0.0753
......................................CUAGUAUUGCACUUGAGACGGCCUG...  5         0.403
.........................................GUAUUGCACUUGAGACGGCCUG...  1         0.14
..........................................UAUUGCACUUGAGACGGCCUGA..  22290     2.07e+03
..........................................UAUUGCACUUGAGACGGCCUG...  5189      494
..........................................UAUUGCACUUGAGACGGCCU....  1347      125
..........................................UAUUGCACUUGAGACGGCCUGAU.  383       42.4
..........................................UAUUGCACUUGAGACGGCC.....  130       12.3
..........................................UAUUGCACUUGAGACGGC......  80        5.97
..........................................UAUUGCACUUGAGACGGCCUGAUU  12        1.56
..........................................UAUUGCACUUGAGACGG.......  7         0.559
...........................................AUUGCACUUGAGACGGCCUGA..  69        4.77
...........................................AUUGCACUUGAGACGGCCUG...  19        1.16
...........................................AUUGCACUUGAGACGGCCUGAU.  12        0.731
...........................................AUUGCACUUGAGACGGCCU....  3         0.347
...........................................AUUGCACUUGAGACGGCCUGAUU  1         0.035
............................................UUGCACUUGAGACGGCCUGA..  66        4.44
............................................UUGCACUUGAGACGGCCUG...  8         0.644
............................................UUGCACUUGAGACGGCCUGAU.  2         0.164
.............................................UGCACUUGAGACGGCCUGA..  23        2.68
.............................................UGCACUUGAGACGGCCU....  2         0.12
..............................................GCACUUGAGACGGCCUGA..  27        2.57
..............................................GCACUUGAGACGGCCUG...  4         0.325
...............................................CACUUGAGACGGCCUGA..  4         0.309
GAUUUGGUUCGUCACAAGGGCAAUUCUGCAUUUUUUAACUAGUAUUGCACUUGAGACGGCCUGAUU
((((.(((.((((.((((.(((((.(((...........))).))))).)))).))))))).)))) (-20.00)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000010 68head GEO : GSM240749 [ Chung WJ et al.]
ER0000000011 33S2 cell GEO : GSM272651 [ Chung WJ et al.]
ER0000000012 4S2 cell GEO : GSM272652 [ Chung WJ et al.]
ER0000000013 6Kc cell GEO : GSM272653 [ Chung WJ et al.]
ER0000000014 885imaginal disc GEO : GSM275691 [ Chung WJ et al.]
ER0000000015 3head GEO : GSM286601 [ Chung WJ et al.]
ER0000000016 62whole body GEO : GSM286602 [ Chung WJ et al.]
ER0000000017 735whole body GEO : GSM286603 [ Chung WJ et al.]
ER0000000018 2834embryo GEO : GSM286604 [ Chung WJ et al.]
ER0000000019 6828embryo GEO : GSM286605 [ Chung WJ et al.]
ER0000000020 2107embryo GEO : GSM286606 [ Chung WJ et al.]
ER0000000021 4773embryo GEO : GSM286607 [ Chung WJ et al.]
ER0000000022 4330embryo GEO : GSM286611 [ Chung WJ et al.]
ER0000000023 7862embryo GEO : GSM286613 [ Chung WJ et al.]
ER0000000079 42whole body GEO : GSM322208 3rd instar larvae
ER0000000080 62whole body GEO : GSM322219 2-4 day old pupae
ER0000000081 13whole body GEO : GSM322245 3rd instar larvae
ER0000000082 7whole body GEO : GSM322338 2-4 day old pupae
ER0000000083 113head GEO : GSM322533 adult female head
ER0000000084 195head GEO : GSM322543 adult male head
ER0000000085 15whole body GEO : GSM360256 1st instar larvae
ER0000000086 12whole body GEO : GSM360257 1st instar larvae
ER0000000087 86whole body GEO : GSM360260 0-1 day old pupae
ER0000000088 145whole body GEO : GSM360262 0-2 day old pupae
ER0000000089 186embryo GEO : GSM364902 12-24hr embryo
ER0000000090 1459whole body GEO : GSM280082 from 2-4 day old flies
ER0000000091 2928whole body GEO : GSM280083 from 2-4 day old flies
ER0000000092 1617whole body GEO : GSM280084 from 2-4 day old flies
ER0000000093 1622whole body GEO : GSM280085 from 2-4 day old flies
ER0000000094 500whole body GEO : GSM280086 from 2-4 day old flies
ER0000000095 15S2 cell GEO : GSM280087
ER0000000096 6S2 cell GEO : GSM280088
ER0000000099 1129imaginal disc GEO : GSM399105 imaginal disc/brain
ER0000000100 2500whole body GEO : GSM399106 female body
ER0000000101 430whole body GEO : GSM399107 male body
ER0000000102 6S2 cell GEO : GSM371638
ER0000000115 11head GEO : GSM180328 adult heads (female heads, male heads) [ Ruby JG et al.]
ER0000000116 59whole body GEO : GSM180329 adult bodies (female bodies, male bodies) [ Ruby JG et al.]
ER0000000117 339embryo GEO : GSM180330 very early embryo (0-1) [ Ruby JG et al.]
ER0000000118 595embryo GEO : GSM180331 early embryo (2-6) [ Ruby JG et al.]
ER0000000119 235embryo GEO : GSM180332 mid embryo (6-10) [ Ruby JG et al.]
ER0000000120 48embryo GEO : GSM180333 late embryo (12-24) [ Ruby JG et al.]
ER0000000121 2whole body GEO : GSM180334 larvae: 1st instar and 3rd instars [ Ruby JG et al.]
ER0000000122 115imaginal disc GEO : GSM180335 [ Ruby JG et al.]
ER0000000123 2whole body GEO : GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day [ Ruby JG et al.]
ER0000000127 1ovary GEO : GSM385744 Ovary Somatic Sheet (OSS) cells
ER0000000128 3ovary GEO : GSM385748 Ovary Somatic Sheet (OSS) cells
ER0000000129 3ovary GEO : GSM385821 Ovary Somatic Sheet (OSS) cells
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2
PMID:18501606 "Endogenous RNA interference provides a somatic defense against Drosophila transposons" Chung WJ, Okamura K, Martin R, Lai EC Curr Biol. 18:795-802(2008).