Deep sequencing reads for mature sequence MIMAT0000945

Stem-loop ID

ath-MIR396b

Mature ID

ath-miR396b

Reads

            ath-miR396b                                                                                                                 Count     RPM (mean number of reads per million)
.....UACUUUUCCACAGCUUUCUUG.............................................................................................................  1         2.87
..........UUCCACAGCUUUCUUGAACUU........................................................................................................  1124      1.73e+03
..........UUCCACAGCUUUCUUGAACU.........................................................................................................  11        12.7
..........UUCCACAGCUUUCUUGAACUUU.......................................................................................................  7         59.3
..........UUCCACAGCUUUCUUGAAC..........................................................................................................  5         24.5
..........UUCCACAGCUUUCUUGAA...........................................................................................................  1         3.11
...........UCCACAGCUUUCUUGAACUU........................................................................................................  21        73.8
............CCACAGCUUUCUUGAACUU........................................................................................................  57        23.5
.............CACAGCUUUCUUGAACUUU.......................................................................................................  9         0.812
.......................................................................................................GAAGCUCAAGAAAGCUGUGGGA..........  2         11.8
.......................................................................................................GAAGCUCAAGAAAGCUGUGGGAAA........  1         5.89
.......................................................................................................GAAGCUCAAGAAAGCUGUGGGAA.........  1         5.89
.........................................................................................................AGCUCAAGAAAGCUGUGGGAAA........  14        4.29
..........................................................................................................GCUCAAGAAAGCUGUGGGAAA........  57        310
..........................................................................................................GCUCAAGAAAGCUGUGGGA..........  27        161
..........................................................................................................GCUCAAGAAAGCUGUGGGAA.........  9         52
...........................................................................................................CUCAAGAAAGCUGUGGGAAA........  50        82.6
...........................................................................................................CUCAAGAAAGCUGUGGGAAAA.......  5         32.7
...........................................................................................................CUCAAGAAAGCUGUGGGAA.........  2         8.76
............................................................................................................UCAAGAAAGCUGUGGGAAA........  2         11.9
GGUCAUACUUUUCCACAGCUUUCUUGAACUUUCUUUUUCAUUUCCAUUGUUUUUUUCUUAAACAAAAGUAAGAAGAAAAAAAACUUUAAGAUUAAGCAUUUUGGAAGCUCAAGAAAGCUGUGGGAAAACAUGACA
.(((((..(((((((((((((((((((.(((((................(((((((((((........)))))))))))....(((.......)))......))))).)))))))))))))))))))..))))). (-48.00)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000003	2564	whole body	GEO : GSM253622		[ Mi S et al.]
ER0000000004	56	whole body	GEO : GSM253623		[ Mi S et al.]
ER0000000005	162	whole body	GEO : GSM253624		[ Mi S et al.]
ER0000000006	68	whole body	GEO : GSM253625		[ Mi S et al.]
ER0000000208	44	flower	GEO : GSM118372		[ Rajagopalan R et al.]
ER0000000209	50	rosette leaf	GEO : GSM118373		[ Rajagopalan R et al.]
ER0000000210	103	seedling	GEO : GSM118374		[ Rajagopalan R et al.]
ER0000000211	146	silique	GEO : GSM118375		[ Rajagopalan R et al.]

References

1. PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
2. PMID:18342361 "Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide" Mi S, Cai T, Hu Y, Chen Y, Hodges E, Ni F, Wu L, Li S, Zhou H, Long C, Chen S, Hannon GJ, Qi Y. Cell. 133:116-127(2008).