Deep sequencing reads for mature sequence MIMAT0003169

Stem-loop ID mmu-mir-539
Mature ID mmu-miR-539-5p
Reads 
       mmu-miR-539-5p                          mmu-miR-539-3p                Count     RPM (mean number of reads per million)
......AGGAGAAAUUAUCCUUGGUGUGUU............................................  13        0.32
......AGGAGAAAUUAUCCUUGGUGUGU.............................................  6         0.101
.......GGAGAAAUUAUCCUUGGUGUGUU............................................  661       14.9
.......GGAGAAAUUAUCCUUGGUGUGU.............................................  500       9.47
.......GGAGAAAUUAUCCUUGGUGU...............................................  19        0.136
.......GGAGAAAUUAUCCUUGGUGUG..............................................  12        0.144
.......GGAGAAAUUAUCCUUGGUG................................................  7         0.166
.......GGAGAAAUUAUCCUUGGU.................................................  1         0.00602
........GAGAAAUUAUCCUUGGUG................................................  1         0.0227
........GAGAAAUUAUCCUUGGUGUGU.............................................  1         0.00602
........GAGAAAUUAUCCUUGGUGUGUU............................................  1         0.00533
.........AGAAAUUAUCCUUGGUGUGU.............................................  1         0.00602
.........AGAAAUUAUCCUUGGUGUGUU............................................  1         0.0243
..........GAAAUUAUCCUUGGUGUGU.............................................  1         0.0289
..........GAAAUUAUCCUUGGUGUGUU............................................  1         0.151
...........AAAUUAUCCUUGGUGUGUU............................................  2         0.0259
...........AAAUUAUCCUUGGUGUGU.............................................  1         0.0229
............AAUUAUCCUUGGUGUGUU............................................  18        0.285
............AAUUAUCCUUGGUGUGU.............................................  3         0.0349
.............AUUAUCCUUGGUGUGUU............................................  11        0.263
..............................GGCUCUUUUGGAUGAAU...........................  1         0.109
.............................................AUCAUACAAGGAUAAUUUCUU........  1         0.0289
..............................................UCAUACAAGGAUAAUUUCUUUUUGA...  1         0.0289
..............................................UCAUACAAGGAUAAUUUCUUUUU.....  1         0.00865
...............................................CAUACAAGGAUAAUUUCUUUUU.....  332       8.07
...............................................CAUACAAGGAUAAUUUCUUUU......  30        0.743
...............................................CAUACAAGGAUAAUUUCUUU.......  3         0.135
...............................................CAUACAAGGAUAAUUUC..........  2         0.0483
...............................................CAUACAAGGAUAAUUUCUU........  1         0.0263
................................................AUACAAGGAUAAUUUCUUUUUG....  39        0.878
................................................AUACAAGGAUAAUUUCUUUUUGA...  14        0.368
................................................AUACAAGGAUAAUUUCUUUUU.....  10        0.153
................................................AUACAAGGAUAAUUUCUUUU......  3         0.0485
.................................................UACAAGGAUAAUUUCUUUUU.....  30        0.54
.................................................UACAAGGAUAAUUUCUUUUUG....  5         0.0833
..................................................ACAAGGAUAAUUUCUUUUU.....  30        0.565
...................................................CAAGGAUAAUUUCUUUUU.....  127       2.85
...................................................CAAGGAUAAUUUCUUUU......  2         0.0456
...................................................CAAGGAUAAUUUCUUUUUG....  1         0.0227
....................................................AAGGAUAAUUUCUUUUU.....  98        2.18
UACUUGAGGAGAAAUUAUCCUUGGUGUGUUGGCUCUUUUGGAUGAAUCAUACAAGGAUAAUUUCUUUUUGAGUA
((((..(((((((((((((((((.((((((.(..(....)..).)).)))))))))))))))))))))..)))) (-31.80)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000029 1ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000036 3brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 21brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 18brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 2brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 47brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 5whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 88whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 64whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 11whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 89whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 124whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 168whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 171whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 166whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 192whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 174whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 1259whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 2embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 35embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 30embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 6embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 4embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 17embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 23embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000062 2embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 6embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000235 9bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000244 16spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 74 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 66 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000250 31brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000254 1pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 18skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 26skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).