miRNA Search Results

Deep sequencing reads for mature sequence MIMAT0003498
Stem-loop ID	mmu-mir-708
Mature ID	mmu-miR-708-3p
Reads	mmu-miR-708-5p mmu-miR-708-3p Count RPM (mean number of reads per million) ....GUUUGAAAUGGGGACUGCCCUC................................................................................... 4 0.109 .....UUUGAAAUGGGGACUGCCCUC................................................................................... 1 0.00248 ......UUGAAAUGGGGACUGCCCUC................................................................................... 7 0.19 ......UUGAAAUGGGGACUGCC...................................................................................... 1 0.0151 .......UGAAAUGGGGACUGCCCUC................................................................................... 5 0.0409 .......UGAAAUGGGGACUGCCCUCA.................................................................................. 1 0.0151 ........GAAAUGGGGACUGCCCUC................................................................................... 4 0.0424 ........................UCAAGGAGCUUACAAUCUAGCUGG............................................................. 77 1.06 ........................UCAAGGAGCUUACAAUCUAGCUGGG............................................................ 39 0.635 ........................UCAAGGAGCUUACAAUCUAGCU............................................................... 2 0.00557 ........................UCAAGGAGCUUACAAUCUAGCUG.............................................................. 1 0.0119 .........................CAAGGAGCUUACAAUCUAGCUGG............................................................. 27 0.305 .........................CAAGGAGCUUACAAUCUAGCU............................................................... 17 0.291 .........................CAAGGAGCUUACAAUCUAGCUGGG............................................................ 17 0.147 .........................CAAGGAGCUUACAAUCUAGCUG.............................................................. 10 0.0696 ..........................AAGGAGCUUACAAUCUAGCUGG............................................................. 22344 305 ..........................AAGGAGCUUACAAUCUAGCUGGG............................................................ 19742 322 ..........................AAGGAGCUUACAAUCUAGCU............................................................... 3588 34.9 ..........................AAGGAGCUUACAAUCUAGCUG.............................................................. 3085 45.9 ..........................AAGGAGCUUACAAUCUAGC................................................................ 359 2.91 ..........................AAGGAGCUUACAAUCUAG................................................................. 136 0.856 ..........................AAGGAGCUUACAAUCUAGCUGGGG........................................................... 64 0.492 ..........................AAGGAGCUUACAAUCUAGCUGGGGG.......................................................... 5 0.0237 ..........................AAGGAGCUUACAAUCUA.................................................................. 4 0.142 ...........................AGGAGCUUACAAUCUAGCUGGG............................................................ 461 9.01 ...........................AGGAGCUUACAAUCUAGCUGG............................................................. 381 4.38 ...........................AGGAGCUUACAAUCUAGCU............................................................... 54 0.644 ...........................AGGAGCUUACAAUCUAGCUG.............................................................. 50 0.3 ...........................AGGAGCUUACAAUCUAGC................................................................ 14 0.107 ...........................AGGAGCUUACAAUCUAG................................................................. 3 0.0146 ............................GGAGCUUACAAUCUAGCUGGG............................................................ 38 0.593 ............................GGAGCUUACAAUCUAGCUGG............................................................. 23 0.285 ............................GGAGCUUACAAUCUAGCU............................................................... 1 0.00315 .............................GAGCUUACAAUCUAGCUGGG............................................................ 40 0.674 .............................GAGCUUACAAUCUAGCUGG............................................................. 37 0.639 .............................GAGCUUACAAUCUAGCUGGGG........................................................... 1 0.00315 .............................GAGCUUACAAUCUAGCUGGGGGU......................................................... 1 0.00419 ..............................AGCUUACAAUCUAGCUGGG............................................................ 9 0.128 ..............................AGCUUACAAUCUAGCUGG............................................................. 9 0.0617 ..............................AGCUUACAAUCUAGCUG.............................................................. 1 0.0137 ...............................GCUUACAAUCUAGCUGGG............................................................ 17 0.269 ...............................GCUUACAAUCUAGCUGG............................................................. 8 0.0792 ................................CUUACAAUCUAGCUGGG............................................................ 86 2.27 ................................CUUACAAUCUAGCUGGGG........................................................... 1 0.00315 ...............................................GGGGUAGAUGACUUGCACUUGAACACA................................... 2 0.0058 ................................................GGGUAGAUGACUUGCACUUGAACA..................................... 5 0.0329 ................................................GGGUAGAUGACUUGCACUUG......................................... 1 0.00419 ................................................GGGUAGAUGACUUGCACUU.......................................... 1 0.00419 .................................................GGUAGAUGACUUGCACUUGAACA..................................... 628 3.6 .................................................GGUAGAUGACUUGCACUUGAA....................................... 12 0.0698 .................................................GGUAGAUGACUUGCACUUGAAC...................................... 11 0.0561 .................................................GGUAGAUGACUUGCACUUG......................................... 6 0.0226 .................................................GGUAGAUGACUUGCACUUGA........................................ 5 0.0356 .................................................GGUAGAUGACUUGCACUUGAACAC.................................... 2 0.00685 .......................................................UGACUUGCACUUGAACA..................................... 1 0.0123 ....................................................................AACACAACUAGACUGUGAGCUUCUAGA.............. 2 0.0155 .....................................................................ACACAACUAGACUGUGAGCUU................... 5 0.0242 .....................................................................ACACAACUAGACUGUGAGCUUC.................. 5 0.0401 .....................................................................ACACAACUAGACUGUGAGCU.................... 1 0.00278 .....................................................................ACACAACUAGACUGUGAGC..................... 1 0.00278 ......................................................................CACAACUAGACUGUGAGCUUCUAGA.............. 2 0.102 ......................................................................CACAACUAGACUGUGAGCUUCU................. 1 0.0123 ......................................................................CACAACUAGACUGUGAGCUUCUA................ 1 0.00315 .......................................................................ACAACUAGACUGUGAGCUUCUAG............... 1 0.00315 ........................................................................CAACUAGACUGUGAGCUUCUAG............... 1256 21.2 ........................................................................CAACUAGACUGUGAGCUUCUAGA.............. 743 12.1 ........................................................................CAACUAGACUGUGAGCUUCU................. 227 2.73 ........................................................................CAACUAGACUGUGAGCUUCUA................ 119 1.33 ........................................................................CAACUAGACUGUGAGCUUC.................. 18 0.144 ........................................................................CAACUAGACUGUGAGCUU................... 2 0.0241 ........................................................................CAACUAGACUGUGAGCU.................... 1 0.0123 .........................................................................AACUAGACUGUGAGCUUCUAGA.............. 878 11.6 .........................................................................AACUAGACUGUGAGCUUCUAG............... 234 3.31 .........................................................................AACUAGACUGUGAGCUUCU................. 27 0.361 .........................................................................AACUAGACUGUGAGCUUCUA................ 22 0.119 .........................................................................AACUAGACUGUGAGCUUC.................. 2 0.0275 .........................................................................AACUAGACUGUGAGCUUCUAGAG............. 2 0.0172 ..........................................................................ACUAGACUGUGAGCUUCUAGA.............. 133 3.8 ..........................................................................ACUAGACUGUGAGCUUCUAG............... 41 0.331 ..........................................................................ACUAGACUGUGAGCUUCUAGAG............. 9 0.0802 ..........................................................................ACUAGACUGUGAGCUUCUA................ 3 0.0179 ...........................................................................CUAGACUGUGAGCUUCUAG............... 5 0.127 ...........................................................................CUAGACUGUGAGCUUCUAGA.............. 1 0.00278 ............................................................................UAGACUGUGAGCUUCUAGA.............. 6 0.0617 ............................................................................UAGACUGUGAGCUUCUAG............... 2 0.139 .............................................................................AGACUGUGAGCUUCUAGA.............. 3 0.104 .............................................................................AGACUGUGAGCUUCUAG............... 1 0.0151 CUGUGUUUGAAAUGGGGACUGCCCUCAAGGAGCUUACAAUCUAGCUGGGGGUAGAUGACUUGCACUUGAACACAACUAGACUGUGAGCUUCUAGAGGGCAGGGGCCUUA ............(((((.((((((((.(((((((((((.(((((.((.(..(((.((.....)).)))..).)).))))).))))))))))).))))))))...))))) (-48.50)

                          mmu-miR-708-5p                               mmu-miR-708-3p                          Count     RPM (mean number of reads per million)
....GUUUGAAAUGGGGACUGCCCUC...................................................................................  4         0.109
.....UUUGAAAUGGGGACUGCCCUC...................................................................................  1         0.00248
......UUGAAAUGGGGACUGCCCUC...................................................................................  7         0.19
......UUGAAAUGGGGACUGCC......................................................................................  1         0.0151
.......UGAAAUGGGGACUGCCCUC...................................................................................  5         0.0409
.......UGAAAUGGGGACUGCCCUCA..................................................................................  1         0.0151
........GAAAUGGGGACUGCCCUC...................................................................................  4         0.0424
........................UCAAGGAGCUUACAAUCUAGCUGG.............................................................  77        1.06
........................UCAAGGAGCUUACAAUCUAGCUGGG............................................................  39        0.635
........................UCAAGGAGCUUACAAUCUAGCU...............................................................  2         0.00557
........................UCAAGGAGCUUACAAUCUAGCUG..............................................................  1         0.0119
.........................CAAGGAGCUUACAAUCUAGCUGG.............................................................  27        0.305
.........................CAAGGAGCUUACAAUCUAGCU...............................................................  17        0.291
.........................CAAGGAGCUUACAAUCUAGCUGGG............................................................  17        0.147
.........................CAAGGAGCUUACAAUCUAGCUG..............................................................  10        0.0696
..........................AAGGAGCUUACAAUCUAGCUGG.............................................................  22344     305
..........................AAGGAGCUUACAAUCUAGCUGGG............................................................  19742     322
..........................AAGGAGCUUACAAUCUAGCU...............................................................  3588      34.9
..........................AAGGAGCUUACAAUCUAGCUG..............................................................  3085      45.9
..........................AAGGAGCUUACAAUCUAGC................................................................  359       2.91
..........................AAGGAGCUUACAAUCUAG.................................................................  136       0.856
..........................AAGGAGCUUACAAUCUAGCUGGGG...........................................................  64        0.492
..........................AAGGAGCUUACAAUCUAGCUGGGGG..........................................................  5         0.0237
..........................AAGGAGCUUACAAUCUA..................................................................  4         0.142
...........................AGGAGCUUACAAUCUAGCUGGG............................................................  461       9.01
...........................AGGAGCUUACAAUCUAGCUGG.............................................................  381       4.38
...........................AGGAGCUUACAAUCUAGCU...............................................................  54        0.644
...........................AGGAGCUUACAAUCUAGCUG..............................................................  50        0.3
...........................AGGAGCUUACAAUCUAGC................................................................  14        0.107
...........................AGGAGCUUACAAUCUAG.................................................................  3         0.0146
............................GGAGCUUACAAUCUAGCUGGG............................................................  38        0.593
............................GGAGCUUACAAUCUAGCUGG.............................................................  23        0.285
............................GGAGCUUACAAUCUAGCU...............................................................  1         0.00315
.............................GAGCUUACAAUCUAGCUGGG............................................................  40        0.674
.............................GAGCUUACAAUCUAGCUGG.............................................................  37        0.639
.............................GAGCUUACAAUCUAGCUGGGG...........................................................  1         0.00315
.............................GAGCUUACAAUCUAGCUGGGGGU.........................................................  1         0.00419
..............................AGCUUACAAUCUAGCUGGG............................................................  9         0.128
..............................AGCUUACAAUCUAGCUGG.............................................................  9         0.0617
..............................AGCUUACAAUCUAGCUG..............................................................  1         0.0137
...............................GCUUACAAUCUAGCUGGG............................................................  17        0.269
...............................GCUUACAAUCUAGCUGG.............................................................  8         0.0792
................................CUUACAAUCUAGCUGGG............................................................  86        2.27
................................CUUACAAUCUAGCUGGGG...........................................................  1         0.00315
...............................................GGGGUAGAUGACUUGCACUUGAACACA...................................  2         0.0058
................................................GGGUAGAUGACUUGCACUUGAACA.....................................  5         0.0329
................................................GGGUAGAUGACUUGCACUUG.........................................  1         0.00419
................................................GGGUAGAUGACUUGCACUU..........................................  1         0.00419
.................................................GGUAGAUGACUUGCACUUGAACA.....................................  628       3.6
.................................................GGUAGAUGACUUGCACUUGAA.......................................  12        0.0698
.................................................GGUAGAUGACUUGCACUUGAAC......................................  11        0.0561
.................................................GGUAGAUGACUUGCACUUG.........................................  6         0.0226
.................................................GGUAGAUGACUUGCACUUGA........................................  5         0.0356
.................................................GGUAGAUGACUUGCACUUGAACAC....................................  2         0.00685
.......................................................UGACUUGCACUUGAACA.....................................  1         0.0123
....................................................................AACACAACUAGACUGUGAGCUUCUAGA..............  2         0.0155
.....................................................................ACACAACUAGACUGUGAGCUU...................  5         0.0242
.....................................................................ACACAACUAGACUGUGAGCUUC..................  5         0.0401
.....................................................................ACACAACUAGACUGUGAGCU....................  1         0.00278
.....................................................................ACACAACUAGACUGUGAGC.....................  1         0.00278
......................................................................CACAACUAGACUGUGAGCUUCUAGA..............  2         0.102
......................................................................CACAACUAGACUGUGAGCUUCU.................  1         0.0123
......................................................................CACAACUAGACUGUGAGCUUCUA................  1         0.00315
.......................................................................ACAACUAGACUGUGAGCUUCUAG...............  1         0.00315
........................................................................CAACUAGACUGUGAGCUUCUAG...............  1256      21.2
........................................................................CAACUAGACUGUGAGCUUCUAGA..............  743       12.1
........................................................................CAACUAGACUGUGAGCUUCU.................  227       2.73
........................................................................CAACUAGACUGUGAGCUUCUA................  119       1.33
........................................................................CAACUAGACUGUGAGCUUC..................  18        0.144
........................................................................CAACUAGACUGUGAGCUU...................  2         0.0241
........................................................................CAACUAGACUGUGAGCU....................  1         0.0123
.........................................................................AACUAGACUGUGAGCUUCUAGA..............  878       11.6
.........................................................................AACUAGACUGUGAGCUUCUAG...............  234       3.31
.........................................................................AACUAGACUGUGAGCUUCU.................  27        0.361
.........................................................................AACUAGACUGUGAGCUUCUA................  22        0.119
.........................................................................AACUAGACUGUGAGCUUC..................  2         0.0275
.........................................................................AACUAGACUGUGAGCUUCUAGAG.............  2         0.0172
..........................................................................ACUAGACUGUGAGCUUCUAGA..............  133       3.8
..........................................................................ACUAGACUGUGAGCUUCUAG...............  41        0.331
..........................................................................ACUAGACUGUGAGCUUCUAGAG.............  9         0.0802
..........................................................................ACUAGACUGUGAGCUUCUA................  3         0.0179
...........................................................................CUAGACUGUGAGCUUCUAG...............  5         0.127
...........................................................................CUAGACUGUGAGCUUCUAGA..............  1         0.00278
............................................................................UAGACUGUGAGCUUCUAGA..............  6         0.0617
............................................................................UAGACUGUGAGCUUCUAG...............  2         0.139
.............................................................................AGACUGUGAGCUUCUAGA..............  3         0.104
.............................................................................AGACUGUGAGCUUCUAG...............  1         0.0151
CUGUGUUUGAAAUGGGGACUGCCCUCAAGGAGCUUACAAUCUAGCUGGGGGUAGAUGACUUGCACUUGAACACAACUAGACUGUGAGCUUCUAGAGGGCAGGGGCCUUA
............(((((.((((((((.(((((((((((.(((((.((.(..(((.((.....)).)))..).)).))))).))))))))))).))))))))...))))) (-48.50)

miRBase

Deep sequencing reads for mature sequence MIMAT0003498

Filter reads

References

References
1	PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).