Deep sequencing reads for mature sequence MIMAT0003931

Stem-loop ID

ath-MIR472

Mature ID

ath-miR472

Reads

                                                                                                                                           ath-miR472                     Count     RPM (mean number of reads per million)
..UGUAUGUAUGUAUGGUCGAA..................................................................................................................................................  1         3.11
.....AUGUAUGUAUGGUCGAAGUAG..............................................................................................................................................  6         41.1
......UGUAUGUAUGGUCGAAGUAGG.............................................................................................................................................  76        80
........UAUGUAUGGUCGAAGUAGGCA...........................................................................................................................................  11        0.993
.........AUGUAUGGUCGAAGUAGGCAA..........................................................................................................................................  33        204
.........AUGUAUGGUCGAAGUAGGCA...........................................................................................................................................  3         22.8
..........UGUAUGGUCGAAGUAGGCA...........................................................................................................................................  4         11.7
............UAUGGUCGAAGUAGGCAAAAUCUC....................................................................................................................................  1         5.89
............UAUGGUCGAAGUAGGCAAAAUCU.....................................................................................................................................  1         5.89
.............AUGGUCGAAGUAGGCAAAAUC......................................................................................................................................  52        300
.............AUGGUCGAAGUAGGCAAAAUCUCA...................................................................................................................................  3         17.7
.............AUGGUCGAAGUAGGCAAAAU.......................................................................................................................................  1         7.59
......................................................................................................................................AUUUUUCCUACUCCGCCCAUA.............  1         7.59
.......................................................................................................................................UUUUUCCUACUCCGCCCAUACC...........  6         16.7
........................................................................................................................................UUUUCCUACUCCGCCCAUACC...........  2         5.42
...........................................................................................................................................UCCUACUCCGCCCAUACCAUAC.......  3         12.5
............................................................................................................................................CCUACUCCGCCCAUACCA..........  1         2.71
............................................................................................................................................CCUACUCCGCCCAUACCAUAC.......  1         2.71
............................................................................................................................................CCUACUCCGCCCAUACCAUA........  1         11.8
............................................................................................................................................CCUACUCCGCCCAUACCAU.........  1         2.87
..............................................................................................................................................UACUCCGCCCAUACCAUACAUA....  18        4.25
..................................................................................................................................................CCGCCCAUACCAUACAUACACC  4         15.3
UCUGUAUGUAUGUAUGGUCGAAGUAGGCAAAAUCUCACCUUUCUAGCAGAUCAACAAUGAAUUUUGUGGAAUAGAUGUUGGAUUUGUAAGGUUUUGGUGUUUGCAAGUGUUGAGAUGCGCAAGAUUUGAGUAAGAUUUUUCCUACUCCGCCCAUACCAUACAUACACC
..(((((((((((((((.((.((((((.(((((((.(((..(((.(((..((((((......((((..((..((((.(((......))).)))).....))..))))))))))..)))...)))...).)).))))))).)))))).)).))))).)))))))))).. (-57.00)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000003	103	whole body	GEO : GSM253622		[ Mi S et al.]
ER0000000004	73	whole body	GEO : GSM253623		[ Mi S et al.]
ER0000000005	7	whole body	GEO : GSM253624		[ Mi S et al.]
ER0000000006	3	whole body	GEO : GSM253625		[ Mi S et al.]
ER0000000208	4	flower	GEO : GSM118372		[ Rajagopalan R et al.]
ER0000000209	11	rosette leaf	GEO : GSM118373		[ Rajagopalan R et al.]
ER0000000210	12	seedling	GEO : GSM118374		[ Rajagopalan R et al.]
ER0000000211	17	silique	GEO : GSM118375		[ Rajagopalan R et al.]

References

1. PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
2. PMID:18342361 "Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide" Mi S, Cai T, Hu Y, Chen Y, Hodges E, Ni F, Wu L, Li S, Zhou H, Long C, Chen S, Hannon GJ, Qi Y. Cell. 133:116-127(2008).