miRNA Search Results

Deep sequencing reads for mature sequence MIMAT0004526
Stem-loop ID	mmu-mir-101a
Mature ID	mmu-miR-101a-5p
Reads	mmu-miR-101a-5p mmu-miR-101a-3p Count RPM (mean number of reads per million) ............CUCAGUUAUCACAGUGCUGAUGC................................................ 1 0.00227 .............UCAGUUAUCACAGUGCUGAUGC................................................ 478 6.17 .............UCAGUUAUCACAGUGCUGAUGCU............................................... 303 3.94 .............UCAGUUAUCACAGUGCUGAUG................................................. 111 1.2 .............UCAGUUAUCACAGUGCUGAU.................................................. 18 0.188 .............UCAGUUAUCACAGUGCUGA................................................... 4 0.035 .............UCAGUUAUCACAGUGCUG.................................................... 2 0.00455 .............UCAGUUAUCACAGUGCUGAUGCUG.............................................. 1 0.00227 ..............CAGUUAUCACAGUGCUGAUGC................................................ 168 2.9 ..............CAGUUAUCACAGUGCUGAUGCU............................................... 152 1.81 ..............CAGUUAUCACAGUGCUGAUG................................................. 32 0.157 ..............CAGUUAUCACAGUGCUGAU.................................................. 13 0.241 ..............CAGUUAUCACAGUGCUGAUGCUG.............................................. 4 0.0778 ..............CAGUUAUCACAGUGCUGA................................................... 3 0.0123 ..............CAGUUAUCACAGUGCUGAUGCUGUC............................................ 2 0.0544 ..............CAGUUAUCACAGUGCUGAUGCUGU............................................. 1 0.0144 ...............AGUUAUCACAGUGCUGAUGCU............................................... 7 0.0623 ...............AGUUAUCACAGUGCUGAUGC................................................ 4 0.0287 ...............AGUUAUCACAGUGCUGAUG................................................. 3 0.0499 ...............AGUUAUCACAGUGCUGAUGCUGU............................................. 1 0.00227 .................UUAUCACAGUGCUGAUGC................................................ 8 0.0764 .................UUAUCACAGUGCUGAUG................................................. 2 0.0135 ..................UAUCACAGUGCUGAUGCU............................................... 12 0.203 ..................UAUCACAGUGCUGAUGC................................................ 9 0.0457 ...................AUCACAGUGCUGAUGCU............................................... 10 0.0853 ...................................UGUCCAUUCUAAAGGUACAGU........................... 1 0.0112 .........................................UUCUAAAGGUACAGUAC......................... 1 0.00847 .........................................UUCUAAAGGUACAGUACU........................ 1 0.00227 .............................................AAAGGUACAGUACUGUGAUAACU............... 1 0.00105 ................................................GGUACAGUACUGUGAUAACUGA............. 7 0.0178 ................................................GGUACAGUACUGUGAUAACUG.............. 5 0.0123 ................................................GGUACAGUACUGUGAUAACUGAA............ 5 0.0114 .................................................GUACAGUACUGUGAUAACUGA............. 69560 519 .................................................GUACAGUACUGUGAUAACUGAA............ 58166 308 .................................................GUACAGUACUGUGAUAACU............... 38731 134 .................................................GUACAGUACUGUGAUAACUG.............. 13777 85.2 .................................................GUACAGUACUGUGAUAAC................ 571 2.95 .................................................GUACAGUACUGUGAUAACUGAAG........... 227 1.15 .................................................GUACAGUACUGUGAUAA................. 12 0.0807 .................................................GUACAGUACUGUGAUAACUGAAGG.......... 1 0.00221 ..................................................UACAGUACUGUGAUAACUGAA............ 72380 322 ..................................................UACAGUACUGUGAUAACUGA............. 29936 194 ..................................................UACAGUACUGUGAUAACUGAAG........... 13921 154 ..................................................UACAGUACUGUGAUAACUG.............. 7895 29.8 ..................................................UACAGUACUGUGAUAACU............... 143 2.07 ..................................................UACAGUACUGUGAUAACUGAAGG.......... 21 0.0836 ..................................................UACAGUACUGUGAUAAC................ 9 0.194 ..................................................UACAGUACUGUGAUAACUGAAGGA......... 4 0.0118 ..................................................UACAGUACUGUGAUAACUGAAGGAU........ 3 0.0103 ...................................................ACAGUACUGUGAUAACUGAA............ 327 2.51 ...................................................ACAGUACUGUGAUAACUGA............. 196 1.55 ...................................................ACAGUACUGUGAUAACUGAAG........... 170 3.49 ...................................................ACAGUACUGUGAUAACUG.............. 7 0.191 ...................................................ACAGUACUGUGAUAACU............... 2 0.0764 ...................................................ACAGUACUGUGAUAACUGAAGGA......... 1 0.00221 ....................................................CAGUACUGUGAUAACUGAA............ 72 0.552 ....................................................CAGUACUGUGAUAACUGA............. 30 0.411 ....................................................CAGUACUGUGAUAACUGAAG........... 14 0.0667 .....................................................AGUACUGUGAUAACUGAA............ 48 0.584 .....................................................AGUACUGUGAUAACUGA............. 29 0.302 .....................................................AGUACUGUGAUAACUGAAG........... 9 0.0926 ......................................................GUACUGUGAUAACUGAA............ 20 0.42 ......................................................GUACUGUGAUAACUGAAG........... 2 0.015 .......................................................UACUGUGAUAACUGAAG........... 2 0.0186 AGGCUGCCCUGGCUCAGUUAUCACAGUGCUGAUGCUGUCCAUUCUAAAGGUACAGUACUGUGAUAACUGAAGGAUGGCAGCCA .(((((((.....((((((((((((((((((.((((............)))))))))))))))))))))).....))))))). (-47.30)

            mmu-miR-101a-5p                     mmu-miR-101a-3p                      Count     RPM (mean number of reads per million)
............CUCAGUUAUCACAGUGCUGAUGC................................................  1         0.00227
.............UCAGUUAUCACAGUGCUGAUGC................................................  478       6.17
.............UCAGUUAUCACAGUGCUGAUGCU...............................................  303       3.94
.............UCAGUUAUCACAGUGCUGAUG.................................................  111       1.2
.............UCAGUUAUCACAGUGCUGAU..................................................  18        0.188
.............UCAGUUAUCACAGUGCUGA...................................................  4         0.035
.............UCAGUUAUCACAGUGCUG....................................................  2         0.00455
.............UCAGUUAUCACAGUGCUGAUGCUG..............................................  1         0.00227
..............CAGUUAUCACAGUGCUGAUGC................................................  168       2.9
..............CAGUUAUCACAGUGCUGAUGCU...............................................  152       1.81
..............CAGUUAUCACAGUGCUGAUG.................................................  32        0.157
..............CAGUUAUCACAGUGCUGAU..................................................  13        0.241
..............CAGUUAUCACAGUGCUGAUGCUG..............................................  4         0.0778
..............CAGUUAUCACAGUGCUGA...................................................  3         0.0123
..............CAGUUAUCACAGUGCUGAUGCUGUC............................................  2         0.0544
..............CAGUUAUCACAGUGCUGAUGCUGU.............................................  1         0.0144
...............AGUUAUCACAGUGCUGAUGCU...............................................  7         0.0623
...............AGUUAUCACAGUGCUGAUGC................................................  4         0.0287
...............AGUUAUCACAGUGCUGAUG.................................................  3         0.0499
...............AGUUAUCACAGUGCUGAUGCUGU.............................................  1         0.00227
.................UUAUCACAGUGCUGAUGC................................................  8         0.0764
.................UUAUCACAGUGCUGAUG.................................................  2         0.0135
..................UAUCACAGUGCUGAUGCU...............................................  12        0.203
..................UAUCACAGUGCUGAUGC................................................  9         0.0457
...................AUCACAGUGCUGAUGCU...............................................  10        0.0853
...................................UGUCCAUUCUAAAGGUACAGU...........................  1         0.0112
.........................................UUCUAAAGGUACAGUAC.........................  1         0.00847
.........................................UUCUAAAGGUACAGUACU........................  1         0.00227
.............................................AAAGGUACAGUACUGUGAUAACU...............  1         0.00105
................................................GGUACAGUACUGUGAUAACUGA.............  7         0.0178
................................................GGUACAGUACUGUGAUAACUG..............  5         0.0123
................................................GGUACAGUACUGUGAUAACUGAA............  5         0.0114
.................................................GUACAGUACUGUGAUAACUGA.............  69560     519
.................................................GUACAGUACUGUGAUAACUGAA............  58166     308
.................................................GUACAGUACUGUGAUAACU...............  38731     134
.................................................GUACAGUACUGUGAUAACUG..............  13777     85.2
.................................................GUACAGUACUGUGAUAAC................  571       2.95
.................................................GUACAGUACUGUGAUAACUGAAG...........  227       1.15
.................................................GUACAGUACUGUGAUAA.................  12        0.0807
.................................................GUACAGUACUGUGAUAACUGAAGG..........  1         0.00221
..................................................UACAGUACUGUGAUAACUGAA............  72380     322
..................................................UACAGUACUGUGAUAACUGA.............  29936     194
..................................................UACAGUACUGUGAUAACUGAAG...........  13921     154
..................................................UACAGUACUGUGAUAACUG..............  7895      29.8
..................................................UACAGUACUGUGAUAACU...............  143       2.07
..................................................UACAGUACUGUGAUAACUGAAGG..........  21        0.0836
..................................................UACAGUACUGUGAUAAC................  9         0.194
..................................................UACAGUACUGUGAUAACUGAAGGA.........  4         0.0118
..................................................UACAGUACUGUGAUAACUGAAGGAU........  3         0.0103
...................................................ACAGUACUGUGAUAACUGAA............  327       2.51
...................................................ACAGUACUGUGAUAACUGA.............  196       1.55
...................................................ACAGUACUGUGAUAACUGAAG...........  170       3.49
...................................................ACAGUACUGUGAUAACUG..............  7         0.191
...................................................ACAGUACUGUGAUAACU...............  2         0.0764
...................................................ACAGUACUGUGAUAACUGAAGGA.........  1         0.00221
....................................................CAGUACUGUGAUAACUGAA............  72        0.552
....................................................CAGUACUGUGAUAACUGA.............  30        0.411
....................................................CAGUACUGUGAUAACUGAAG...........  14        0.0667
.....................................................AGUACUGUGAUAACUGAA............  48        0.584
.....................................................AGUACUGUGAUAACUGA.............  29        0.302
.....................................................AGUACUGUGAUAACUGAAG...........  9         0.0926
......................................................GUACUGUGAUAACUGAA............  20        0.42
......................................................GUACUGUGAUAACUGAAG...........  2         0.015
.......................................................UACUGUGAUAACUGAAG...........  2         0.0186
AGGCUGCCCUGGCUCAGUUAUCACAGUGCUGAUGCUGUCCAUUCUAAAGGUACAGUACUGUGAUAACUGAAGGAUGGCAGCCA
.(((((((.....((((((((((((((((((.((((............)))))))))))))))))))))).....))))))). (-47.30)

miRBase

Deep sequencing reads for mature sequence MIMAT0004526

Filter reads

References

References
1	PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).