Deep sequencing reads for mature sequence MIMAT0005951

Stem-loop ID

hsa-mir-1307

Mature ID

hsa-miR-1307-3p

Reads

                                      hsa-miR-1307-5p                        hsa-miR-1307-3p                                                           Count     RPM (mean number of reads per million)
........................................UCGACCGGACCUCGACCGGCU........................................................................................  3486      127
........................................UCGACCGGACCUCGACCGGCUC.......................................................................................  2275      72.6
........................................UCGACCGGACCUCGACCGGCUCG......................................................................................  631       22.7
........................................UCGACCGGACCUCGACCGGC.........................................................................................  94        3.26
........................................UCGACCGGACCUCGACCGG..........................................................................................  8         0.27
........................................UCGACCGGACCUCGACCGGCUCGU.....................................................................................  6         0.189
........................................UCGACCGGACCUCGACC............................................................................................  1         0.422
.........................................CGACCGGACCUCGACCGGCUC.......................................................................................  1         0.422
..........................................GACCGGACCUCGACCGGCU........................................................................................  2         0.135
..........................................GACCGGACCUCGACCGGCUC.......................................................................................  2         0.0725
...............................................................................ACUCGGCGUGGCGUCGGUCGUGG...............................................  1154      701
...............................................................................ACUCGGCGUGGCGUCGGUCGUG................................................  949       246
...............................................................................ACUCGGCGUGGCGUCGGUCGU.................................................  297       142
...............................................................................ACUCGGCGUGGCGUCGGUCGUGGU..............................................  63        106
...............................................................................ACUCGGCGUGGCGUCGGUCG..................................................  47        124
...............................................................................ACUCGGCGUGGCGUCGG.....................................................  28        0.935
...............................................................................ACUCGGCGUGGCGUCGGUC...................................................  23        4.22
...............................................................................ACUCGGCGUGGCGUCGGU....................................................  17        0.646
...............................................................................ACUCGGCGUGGCGUCGGUCGUGGUA.............................................  6         0.174
................................................................................CUCGGCGUGGCGUCGGUCGUGG...............................................  1000      380
................................................................................CUCGGCGUGGCGUCGGUCGUGGU..............................................  172       52.3
................................................................................CUCGGCGUGGCGUCGGUCGUG................................................  162       73.9
................................................................................CUCGGCGUGGCGUCGGUCGU.................................................  74        2.57
................................................................................CUCGGCGUGGCGUCGGUCGUGGUA.............................................  8         0.205
................................................................................CUCGGCGUGGCGUCGGUCG..................................................  6         39.9
................................................................................CUCGGCGUGGCGUCGGU....................................................  2         0.0523
..................................................................................CGGCGUGGCGUCGGUCGUGG...............................................  4         1
..................................................................................CGGCGUGGCGUCGGUCGUGGU..............................................  1         0.25
...................................................................................GGCGUGGCGUCGGUCGUGG...............................................  2         0.0725
CAUCAAGACCCAGCUGAGUCACUGUCACUGCCUACCAAUCUCGACCGGACCUCGACCGGCUCGUCUGUGUUGCCAAUCGACUCGGCGUGGCGUCGGUCGUGGUAGAUAGGCGGUCAUGCAUACGAAUUUUCAGCUCUUGUUCUGGUGAC
(((((..((..(((((((((..(((.((((((((.(.(((.(((((((.((.((.(((..(((..((......))..)))..))))).))..))))))).))).).))))))))...)))...))...)))))))...))..))))).. (-57.30)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000001	30	embryonic stem cell	GEO : GSM541796		[ Bar M et al.]
ER0000000002	72	embryonic stem cell	GEO : GSM541797		[ Bar M et al.]
ER0000000103	1359	melanoblast	GEO : GSM458535		[ Stark MS et al.]
ER0000000104	146	melanocyte	GEO : GSM458536		[ Stark MS et al.]
ER0000000105	498		GEO : GSM458537	cell line: primary giant congental nevus	[ Stark MS et al.]
ER0000000106	131	melanoma	GEO : GSM458538	cell line: secondary acral melanoma	[ Stark MS et al.]
ER0000000107	316	melanoma	GEO : GSM458539	cell line: secondary mucosal melanoma	[ Stark MS et al.]
ER0000000108	1832	melanoma	GEO : GSM458540	cell line: secondary cutaneous melanoma	[ Stark MS et al.]
ER0000000109	631	melanoma	GEO : GSM458541	cell line: primary uveal melanoma	[ Stark MS et al.]
ER0000000110	3879	melanoma	GEO : GSM458542	cell line: secondary cutaneous melanoma	[ Stark MS et al.]
ER0000000111	892	melanoma	GEO : GSM458543	cell line: secondary cutaneous melanoma	[ Stark MS et al.]
ER0000000112	560	melanoma	GEO : GSM458544	cell line: secondary cutaneous melanoma	[ Stark MS et al.]
ER0000000113	365	melanoma	GEO : GSM458545	cell line: secondary cutaneous melanoma from a chronically sun-damaged body site	[ Stark MS et al.]
ER0000000114	1410	melanoma	GEO : GSM458546	cell line: secondary cutaneous melanoma	[ Stark MS et al.]
ER0000000186	1	squamous cell	GEO : GSM532922		[ Witten D et al.]
ER0000000262	14		GEO : GSM337570	antibody: anti-Ago1 4B8
ER0000000263	20		GEO : GSM337571	antibody: anti-Ago2 11A9
ER0000000264	17		GEO : GSM368181	tissue: undifferentiated NPC	[ Zhu JY et al.]
ER0000000265	7		GEO : GSM368182	tissue: clinically negative of NPC	[ Zhu JY et al.]
ER0000000266	71		GEO : GSM368183	tissue: undifferentiated NPC	[ Zhu JY et al.]
ER0000000267	18		GEO : GSM368184	tissue: clinically negative of NPC	[ Zhu JY et al.]

References

1. PMID:18583537 "MicroRNA discovery and profiling in human embryonic stem cells by deep sequencing of small RNA libraries" Bar M, Wyman SK, Fritz BR, Qi J, Garg KS, Parkin RK, Kroh EM, Bendoraite A, Mitchell PS, Nelson AM, Ruzzo WL, Ware C, Radich JP, Gentleman R, Ruohola-Baker H, Tewari M Stem Cells. 26:2496-2505(2008).
2. PMID:19144710 "Identification of novel Epstein-Barr virus microRNA genes from nasopharyngeal carcinomas" Zhu JY, Pfuhl T, Motsch N, Barth S, Nicholls J, Grasser F, Meister G J Virol. 83:3333-3341(2009).
3. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
4. PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).