miRNA Search Results

Deep sequencing reads for mature sequence MIMAT0007850
Stem-loop ID	osa-MIR812j
Mature ID	osa-miR812j
Reads	osa-miR812j Count RPM (mean number of reads per million) ...................................GUCCCAAAAUAAGCGUAGCCAUGA.............................................................................................................................................................................................................................................. 24 5.77 ................................................................................................................................................................AAUAACAAUAAAAAUACUAAUCAU................................................................................................................. 24 5.77 ..........................................................................................................................................................................................AAAAAUUUCAAAUAAGACG............................................................................................ 19 4.57 .............................................................................................................................................................................................AAUUUCAAAUAAGACGGAUGAUUA.................................................................................... 24 5.65 ...............................................................................................................................................................................................UUUCAAAUAAGACGGAUGAU...................................................................................... 20 4.81 ................................................................................................................................................................................................UUCAAAUAAGACGGAUGAUUAAAG................................................................................. 48 11.4 ...................................................................................................................................................................................................AAAUAAGACGGAUGAUUAAAGUUG.............................................................................. 48 11.4 ...................................................................................................................................................................................................AAAUAAGACGGAUGAUUAAAG................................................................................. 21 4.95 ....................................................................................................................................................................................................AAUAAGACGGAUGAUUAAAGUUGG............................................................................. 48 11.4 ....................................................................................................................................................................................................AAUAAGACGGAUGAUUAAAGUUG.............................................................................. 23 5.53 ....................................................................................................................................................................................................AAUAAGACGGAUGAUUAAAGUU............................................................................... 22 5.18 .....................................................................................................................................................................................................AUAAGACGGAUGAUUAAAGUUGGA............................................................................ 48 11.4 .....................................................................................................................................................................................................AUAAGACGGAUGAUUAAAGUUGG............................................................................. 23 5.53 .....................................................................................................................................................................................................AUAAGACGGAUGAUUAAAGUUG.............................................................................. 22 5.18 ......................................................................................................................................................................................................UAAGACGGAUGAUUAAAGUUGGAC........................................................................... 48 11.4 ......................................................................................................................................................................................................UAAGACGGAUGAUUAAAGUUG.............................................................................. 21 5.05 .......................................................................................................................................................................................................AAGACGGAUGAUUAAAGUUGGACA.......................................................................... 48 11.4 .......................................................................................................................................................................................................AAGACGGAUGAUUAAAGUUG.............................................................................. 40 9.52 .......................................................................................................................................................................................................AAGACGGAUGAUUAAAGUUGGAC........................................................................... 23 5.42 ........................................................................................................................................................................................................AGACGGAUGAUUAAAGUUGGACA.......................................................................... 23 5.42 ........................................................................................................................................................................................................AGACGGAUGAUUAAAGUUGGAC........................................................................... 22 5.29 ........................................................................................................................................................................................................AGACGGAUGAUUAAAGUUGGACAC......................................................................... 2 26.8 .........................................................................................................................................................................................................GACGGAUGAUUAAAGUUGGACACG........................................................................ 48 11.4 ..........................................................................................................................................................................................................ACGGAUGAUUAAAGUUGGACACGG....................................................................... 48 11.4 ...........................................................................................................................................................................................................CGGAUGAUUAAAGUUGGACACGGA...................................................................... 48 11.4 ............................................................................................................................................................................................................GGAUGAUUAAAGUUGGACACGGAA..................................................................... 48 11.4 .............................................................................................................................................................................................................GAUGAUUAAAGUUGGACACGGAAA.................................................................... 48 11.4 ..............................................................................................................................................................................................................AUGAUUAAAGUUGGACACGGAAAC................................................................... 48 11.4 ..............................................................................................................................................................................................................AUGAUUAAAGUUGGACACGGA...................................................................... 21 5.05 ..............................................................................................................................................................................................................AUGAUUAAAGUUGGACACGG....................................................................... 20 4.81 ...............................................................................................................................................................................................................UGAUUAAAGUUGGACACGGAAA.................................................................... 22 5.18 ...............................................................................................................................................................................................................UGAUUAAAGUUGGACACGGAA..................................................................... 21 5.05 ................................................................................................................................................................................................................GAUUAAAGUUGGACACGGA...................................................................... 19 4.48 ................................................................................................................................................................................................................GAUUAAAGUUGGACACGG....................................................................... 18 4.32 .................................................................................................................................................................................................................AUUAAAGUUGGACACGGAAACU.................................................................. 22 5.29 ..................................................................................................................................................................................................................UUAAAGUUGGACACGGAAAC................................................................... 20 4.81 ....................................................................................................................................................................................................................AAAGUUGGACACGGAAAC................................................................... 18 4.32 .....................................................................................................................................................................................................................AAGUUGGACACGGAAACUCAUGGC............................................................ 24 5.77 ........................................................................................................................................................................................................................UUGGACACGGAAACUCAUGGCUGC......................................................... 1 11.8 .........................................................................................................................................................................................................................UGGACACGGAAACUCAUGGCUGC......................................................... 1 11.8 ............................................................................................................................................................................................................................ACACGGAAACUCAUGGCUGC......................................................... 20 4.81 .................................................................................................................................................................................................................................GAAACUCAUGGCUGCGUUUAUUUU................................................ 24 5.77 AGAGUGCAUCCUUGGUCUUGGAUAGUACUUCCUUUGUCCCAAAAUAAGCGUAGCCAUGAGUUUUCUUGUCCAACUUUAAUUGUUCGUCUUAUUUAAUUUUUUUUUGAAAAAACUAAAAAACACAAGUCACGCAUAAACUACUAUUCAUGUUUUAUAAUCUAAUAACAAUAAAAAUACUAAUCAUACAAAAAUUUCAAAUAAGACGGAUGAUUAAAGUUGGACACGGAAACUCAUGGCUGCGUUUAUUUUGUGACGGAGAGAGUACUAUUGGAAAGAUCAGCUAGUUGGAAAAUGCCA ...(.((((((((((((((.(((((((((..(((((((.((((((((((((((((((((((((((.((((((((((((((..(((((((((((((((((((...(((.................(((.........)))........((((............)))).............)))...)))))))..))))))))))))..)))))))))))))).)))))))))))))))))))))))))).)))))))..)))))))))...))))))))......)))...)))). (-116.90)

                                                                                                                                                                                                           osa-miR812j                                                                                     Count     RPM (mean number of reads per million)
...................................GUCCCAAAAUAAGCGUAGCCAUGA..............................................................................................................................................................................................................................................  24        5.77
................................................................................................................................................................AAUAACAAUAAAAAUACUAAUCAU.................................................................................................................  24        5.77
..........................................................................................................................................................................................AAAAAUUUCAAAUAAGACG............................................................................................  19        4.57
.............................................................................................................................................................................................AAUUUCAAAUAAGACGGAUGAUUA....................................................................................  24        5.65
...............................................................................................................................................................................................UUUCAAAUAAGACGGAUGAU......................................................................................  20        4.81
................................................................................................................................................................................................UUCAAAUAAGACGGAUGAUUAAAG.................................................................................  48        11.4
...................................................................................................................................................................................................AAAUAAGACGGAUGAUUAAAGUUG..............................................................................  48        11.4
...................................................................................................................................................................................................AAAUAAGACGGAUGAUUAAAG.................................................................................  21        4.95
....................................................................................................................................................................................................AAUAAGACGGAUGAUUAAAGUUGG.............................................................................  48        11.4
....................................................................................................................................................................................................AAUAAGACGGAUGAUUAAAGUUG..............................................................................  23        5.53
....................................................................................................................................................................................................AAUAAGACGGAUGAUUAAAGUU...............................................................................  22        5.18
.....................................................................................................................................................................................................AUAAGACGGAUGAUUAAAGUUGGA............................................................................  48        11.4
.....................................................................................................................................................................................................AUAAGACGGAUGAUUAAAGUUGG.............................................................................  23        5.53
.....................................................................................................................................................................................................AUAAGACGGAUGAUUAAAGUUG..............................................................................  22        5.18
......................................................................................................................................................................................................UAAGACGGAUGAUUAAAGUUGGAC...........................................................................  48        11.4
......................................................................................................................................................................................................UAAGACGGAUGAUUAAAGUUG..............................................................................  21        5.05
.......................................................................................................................................................................................................AAGACGGAUGAUUAAAGUUGGACA..........................................................................  48        11.4
.......................................................................................................................................................................................................AAGACGGAUGAUUAAAGUUG..............................................................................  40        9.52
.......................................................................................................................................................................................................AAGACGGAUGAUUAAAGUUGGAC...........................................................................  23        5.42
........................................................................................................................................................................................................AGACGGAUGAUUAAAGUUGGACA..........................................................................  23        5.42
........................................................................................................................................................................................................AGACGGAUGAUUAAAGUUGGAC...........................................................................  22        5.29
........................................................................................................................................................................................................AGACGGAUGAUUAAAGUUGGACAC.........................................................................  2         26.8
.........................................................................................................................................................................................................GACGGAUGAUUAAAGUUGGACACG........................................................................  48        11.4
..........................................................................................................................................................................................................ACGGAUGAUUAAAGUUGGACACGG.......................................................................  48        11.4
...........................................................................................................................................................................................................CGGAUGAUUAAAGUUGGACACGGA......................................................................  48        11.4
............................................................................................................................................................................................................GGAUGAUUAAAGUUGGACACGGAA.....................................................................  48        11.4
.............................................................................................................................................................................................................GAUGAUUAAAGUUGGACACGGAAA....................................................................  48        11.4
..............................................................................................................................................................................................................AUGAUUAAAGUUGGACACGGAAAC...................................................................  48        11.4
..............................................................................................................................................................................................................AUGAUUAAAGUUGGACACGGA......................................................................  21        5.05
..............................................................................................................................................................................................................AUGAUUAAAGUUGGACACGG.......................................................................  20        4.81
...............................................................................................................................................................................................................UGAUUAAAGUUGGACACGGAAA....................................................................  22        5.18
...............................................................................................................................................................................................................UGAUUAAAGUUGGACACGGAA.....................................................................  21        5.05
................................................................................................................................................................................................................GAUUAAAGUUGGACACGGA......................................................................  19        4.48
................................................................................................................................................................................................................GAUUAAAGUUGGACACGG.......................................................................  18        4.32
.................................................................................................................................................................................................................AUUAAAGUUGGACACGGAAACU..................................................................  22        5.29
..................................................................................................................................................................................................................UUAAAGUUGGACACGGAAAC...................................................................  20        4.81
....................................................................................................................................................................................................................AAAGUUGGACACGGAAAC...................................................................  18        4.32
.....................................................................................................................................................................................................................AAGUUGGACACGGAAACUCAUGGC............................................................  24        5.77
........................................................................................................................................................................................................................UUGGACACGGAAACUCAUGGCUGC.........................................................  1         11.8
.........................................................................................................................................................................................................................UGGACACGGAAACUCAUGGCUGC.........................................................  1         11.8
............................................................................................................................................................................................................................ACACGGAAACUCAUGGCUGC.........................................................  20        4.81
.................................................................................................................................................................................................................................GAAACUCAUGGCUGCGUUUAUUUU................................................  24        5.77
AGAGUGCAUCCUUGGUCUUGGAUAGUACUUCCUUUGUCCCAAAAUAAGCGUAGCCAUGAGUUUUCUUGUCCAACUUUAAUUGUUCGUCUUAUUUAAUUUUUUUUUGAAAAAACUAAAAAACACAAGUCACGCAUAAACUACUAUUCAUGUUUUAUAAUCUAAUAACAAUAAAAAUACUAAUCAUACAAAAAUUUCAAAUAAGACGGAUGAUUAAAGUUGGACACGGAAACUCAUGGCUGCGUUUAUUUUGUGACGGAGAGAGUACUAUUGGAAAGAUCAGCUAGUUGGAAAAUGCCA
...(.((((((((((((((.(((((((((..(((((((.((((((((((((((((((((((((((.((((((((((((((..(((((((((((((((((((...(((.................(((.........)))........((((............)))).............)))...)))))))..))))))))))))..)))))))))))))).)))))))))))))))))))))))))).)))))))..)))))))))...))))))))......)))...)))). (-116.90)

miRBase

Deep sequencing reads for mature sequence MIMAT0007850

Filter reads

References

References
1	PMID:19584097 "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice" Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH Genome Res. 19:1429-1440(2009).
2	PMID:21113019 "Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)" Li T, Li H, Zhang YX, Liu JY Nucleic Acids Res. 39:2821-2833(2011).