Deep sequencing reads for mature sequence MIMAT0009461

Stem-loop ID mmu-mir-1982
Mature ID mmu-miR-1982.2-3p
Reads 
         mmu-miR-1982-5p                        mmu-miR-1982.1-3pmmu-miR-1982.2-3p          Count     RPM (mean number of reads per million)
....GUAUUGCUUGGGAGGGUCC...................................................  1         0.00215
...........UUGGGAGGGUCCUGGGGAGGGG.........................................  2         0.0138
...........UUGGGAGGGUCCUGGGGAGGG..........................................  1         0.0195
...........UUGGGAGGGUCCUGGGGAGGGGA........................................  1         0.00924
...........UUGGGAGGGUCCUGGGGAG............................................  1         0.00785
...............GAGGGUCCUGGGGAGGGGAGUUC....................................  1         0.00488
...................................................UCUCACCCUAUGUUCUCCCACAG  29        0.39
...................................................UCUCACCCUAUGUUCUCCCACA.  25        0.594
...................................................UCUCACCCUAUGUUCUCCCAC..  9         0.194
...................................................UCUCACCCUAUGUUCUCCCA...  2         0.0116
...................................................UCUCACCCUAUGUUCUCCC....  1         0.00494
....................................................CUCACCCUAUGUUCUCCCACA.  1         0.0152
.....................................................UCACCCUAUGUUCUCCCACAG  6         0.0246
.....................................................UCACCCUAUGUUCUCCCACA.  1         0.00702
GUUGGUAUUGCUUGGGAGGGUCCUGGGGAGGGGAGUUCUGGCACCCCAACCUCUCACCCUAUGUUCUCCCACAG
............((((((..(...(((((((((.....(((....))).)))))).)))...)..))))))... (-27.80)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000036 1brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 2brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 4brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 1brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 16brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000042 3whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000045 1whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000048 2whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 2whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 2whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 2whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 7whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000054 1embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000059 1embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 1embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 1embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000217 2bone marrow GEO : GSM539836 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000220 1spleen GEO : GSM539839 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 6spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 1spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 1spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 1peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000227 1lymph nodes GEO : GSM539846 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000229 1bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000230 1bone marrow GEO : GSM539849 strain: C57BL/6J, gender: male
ER0000000231 2bone marrow GEO : GSM539850 strain: C57BL/6J, gender: male
ER0000000232 3peritoneal lavage GEO : GSM539851 strain: C57BL/6J, gender: male
ER0000000236 3spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000239 1spleen GEO : GSM539858 strain: C57BL/6J, gender: male
ER0000000241 1lymph nodes/spleen GEO : GSM539860 strain: C57BL/6J, gender: male
ER0000000242 1lymph nodes/spleen GEO : GSM539861 strain: C57BL/6J, gender: male
ER0000000244 3spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000245 1lymph nodes/spleen GEO : GSM539864 strain: C57BL/6J, gender: male
ER0000000246 1lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 1 GEO : GSM539866 strain: C57BL/6-129
ER0000000250 1brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000254 1pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 1skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000257 1salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000261 1lymph nodes GEO : GSM539880 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).