Deep sequencing reads for mature sequence MIMAT0009774

Stem-loop ID nve-mir-2024g-3
Mature ID nve-miR-2024g-5p
Reads 
                  nve-miR-2024g-5p                nve-miR-2024g-3p                         Count     RPM (mean number of reads per million)
.....................................................UAACACAGUACCGAUAUUGUGA..............  19        1.7e+04
.....................................................UAACACAGUACCGAUAUUGUG...............  4         3.58e+03
.....................................................UAACACAGUACCGAUAUUGUGAA.............  2         1.79e+03
.....................................................UAACACAGUACCGAUAUUGU................  1         896
ACCAAUAAGUGCUACUGCUUCAAAAUAUCGGUGUUGGGUAAAAGGUCACCUUUUAACACAGUACCGAUAUUGUGAAGCACGUUUGCAAA
.........(((.(((((((((.(((((((((((((..(((((((...)))))))...))))))))))))).))))))).))..))).. (-35.80)
Stem-loop ID nve-mir-2024g-2
Mature ID nve-miR-2024g-5p
Reads 
                  nve-miR-2024g-5p                nve-miR-2024g-3p                         Count     RPM (mean number of reads per million)
.....................................................UAACACAGUACCGAUAUUGUGA..............  19        1.7e+04
.....................................................UAACACAGUACCGAUAUUGUG...............  4         3.58e+03
.....................................................UAACACAGUACCGAUAUUGUGAA.............  2         1.79e+03
.....................................................UAACACAGUACCGAUAUUGU................  1         896
ACCAAUAAGUGCUACUGCUUCAAAAUAUCGGUGUUGGGUAAAAGGUCACCUUUUAACACAGUACCGAUAUUGUGAAGCACGUUUGCAAA
.........(((.(((((((((.(((((((((((((..(((((((...)))))))...))))))))))))).))))))).))..))).. (-35.80)
Stem-loop ID nve-mir-2024g-1
Mature ID nve-miR-2024g-5p
Reads 
                  nve-miR-2024g-5p                nve-miR-2024g-3p                         Count     RPM (mean number of reads per million)
.....................................................UAACACAGUACCGAUAUUGUGA..............  19        1.7e+04
.....................................................UAACACAGUACCGAUAUUGUG...............  4         3.58e+03
.....................................................UAACACAGUACCGAUAUUGUGAA.............  2         1.79e+03
.....................................................UAACACAGUACCGAUAUUGU................  1         896
ACCAAUAAGUGCUACUGCUUCAAAAUAUCGGUGUUGGGUAAAAGGUCACCUUUUAACACAGUACCGAUAUUGUGAAGCACGUUUGCAAA
.........(((.(((((((((.(((((((((((((..(((((((...)))))))...))))))))))))).))))))).))..))).. (-35.80)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000132 274whole body [ Wheeler BM et al.]
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:19196333 "The deep evolution of metazoan microRNAs" Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ Evol Dev. 11:50-68(2009).