Deep sequencing reads for mature sequence MIMAT0013755

Stem-loop ID

bmo-mir-2839

Mature ID

bmo-miR-2839-3p

Reads

         bmo-miR-2839-5p                  bmo-miR-2839-3p                     Count     RPM (mean number of reads per million)
........CGUCAAACAGAGCGCCAGCGCU.............................................  1         0.227
........CGUCAAACAGAGCGCCAGCG...............................................  1         0.861
..........UCAAACAGAGCGCCAGCGCUAU...........................................  1         0.861
.........................................AGCGCUGGCGCACUGUUUGACG............  17        4.59
.........................................AGCGCUGGCGCACUGUUUGAC.............  1         0.861
...........................................CGCUGGCGCACUGUUUGACGGU..........  46        21.4
...........................................CGCUGGCGCACUGUUUGACGG...........  27        10.7
...........................................CGCUGGCGCACUGUUUGACGGUAU........  1         0.233
...........................................CGCUGGCGCACUGUUUGACG............  1         0.233
...........................................CGCUGGCGCACUGUUUGACGGUA.........  1         0.233
............................................GCUGGCGCACUGUUUGACGGU..........  2         1.09
............................................GCUGGCGCACUGUUUGACGGUA.........  1         0.233
............................................GCUGGCGCACUGUUUGACGGUAU........  1         0.861
.............................................CUGGCGCACUGUUUGACGGU..........  3         1.33
.....................................................CUGUUUGACGGUAUGUUACC..  1         0.861
AAUCAUACCGUCAAACAGAGCGCCAGCGCUAUGAGCGCUAUAGCGCUGGCGCACUGUUUGACGGUAUGUUACCGU
...(((((((((((((((.((((((((((((((.....)))))))))))))).)))))))))))))))....... (-53.90)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000268	6	whole body	GEO : GSM449725	5th-instar day-3 larvae	[ Liu S et al.]
ER0000000269	100	anterior silk glands	GEO : GSM449726	5th-instar day-3 larvae	[ Liu S et al.]
ER0000000270	36	posterior silk glands	GEO : GSM449727	5th-instar day-3 larvae	[ Liu S et al.]

References

1. PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).