Deep sequencing reads for mature sequence MIMAT0018724

Stem-loop ID

tca-mir-3840

Mature ID

tca-miR-3840-5p

Reads

                tca-miR-3840-5p                    tca-miR-3840-3p                           Count     RPM (mean number of reads per million)
..................AGGGGGUACUGUAAGUACGUAC...................................................  6         17.3
..................AGGGGGUACUGUAAGUACGUACG..................................................  4         0.516
..................AGGGGGUACUGUAAGUAC.......................................................  4         0.516
..................AGGGGGUACUGUAAGUACGUA....................................................  4         0.516
..................AGGGGGUACUGUAAGUACGU.....................................................  2         0.258
.....................................................UAGUACGAACGGUACUCACU..................  98        186
.....................................................UAGUACGAACGGUACUCACUAU................  72        34
.....................................................UAGUACGAACGGUACUCA....................  46        5.93
.....................................................UAGUACGAACGGUACUCACUAUG...............  20        85
.....................................................UAGUACGAACGGUACUCACUA.................  12        1.55
.....................................................UAGUACGAACGGUACUCAC...................  12        18
......................................................AGUACGAACGGUACUCACU..................  28        20.1
......................................................AGUACGAACGGUACUCACUAU................  18        10.6
......................................................AGUACGAACGGUACUCACUA.................  2         0.258
.......................................................GUACGAACGGUACUCACU..................  2         0.258
.........................................................ACGAACGGUACUCACUAU................  2         0.258
CAUCAGUGAAUGCUUUGUAGGGGGUACUGUAAGUACGUACGAUUUUUUUAACGUAGUACGAACGGUACUCACUAUGAACGUUACACAGUUU
.....(((((((.((..(((.(((((((((..((((.((((..........))))))))..))))))))).)))..)))))).)))..... (-31.80)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000199	370	adult	GEO : GSM639446	genotype: wild type, gender: male and female	[ Marco A et al.]
ER0000000200	122	embryo	GEO : GSM639447	genotype: wild type, age: 0-5 days, gender: male and female	[ Marco A et al.]

References

1. PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).