Deep sequencing reads for mature sequence MIMAT0019053

Stem-loop ID hsa-mir-4516
Mature ID hsa-miR-4516
Reads 
hsa-miR-4516                                                                           Count     RPM (mean number of reads per million)
.GGGAGAAGGGUCGGGGC....................................................................  7         115
AGGGAGAAGGGUCGGGGCAGGGAGGGCAGGGCAGGCUCUGGGGUGGGGGGUCUGUGAGUCAGCCACGGCUCUGCCCACGUCUCCCC
.((((((.(((.((((((..((..(((...(((((((((.......)))))))))..)))..))...)))))))))...)))))). (-44.60)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000103 8melanoblast GEO : GSM458535 [ Stark MS et al.]
ER0000000138 1squamous cell GEO : GSM532874 [ Witten D et al.]
ER0000000140 5squamous cell GEO : GSM532876 [ Witten D et al.]
ER0000000144 3squamous cell GEO : GSM532880 [ Witten D et al.]
ER0000000150 2squamous cell GEO : GSM532886 [ Witten D et al.]
ER0000000154 1squamous cell GEO : GSM532890 [ Witten D et al.]
ER0000000156 12squamous cell GEO : GSM532892 [ Witten D et al.]
ER0000000160 7squamous cell GEO : GSM532896 [ Witten D et al.]
ER0000000164 9squamous cell GEO : GSM532900 [ Witten D et al.]
ER0000000168 19adenosquamous cell GEO : GSM532904 [ Witten D et al.]
ER0000000174 17squamous cell GEO : GSM532910 [ Witten D et al.]
ER0000000178 9squamous cell GEO : GSM532914 [ Witten D et al.]
ER0000000180 9squamous cell GEO : GSM532916 [ Witten D et al.]
ER0000000186 18squamous cell GEO : GSM532922 [ Witten D et al.]
ER0000000188 37squamous cell GEO : GSM532924 [ Witten D et al.]
ER0000000266 2 GEO : GSM368183 tissue: undifferentiated NPC [ Zhu JY et al.]
ER0000000267 2 GEO : GSM368184 tissue: clinically negative of NPC [ Zhu JY et al.]
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References

1
PMID:19144710 "Identification of novel Epstein-Barr virus microRNA genes from nasopharyngeal carcinomas" Zhu JY, Pfuhl T, Motsch N, Barth S, Nicholls J, Grasser F, Meister G J Virol. 83:3333-3341(2009).
2
PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).
3
PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).