Deep sequencing reads for mature sequence MIMAT0019339

Stem-loop ID mmu-mir-28c
Mature ID mmu-miR-28c
Reads 
                                              mmu-miR-28c                    Count     RPM (mean number of reads per million)
.........................................UUGAGGAGCUCACAGUCUA...............  5         0.022
............................................AGGAGCUCACAGUCUAUUGA...........  15        0.216
............................................AGGAGCUCACAGUCUAUUG............  7         0.0332
............................................AGGAGCUCACAGUCUAUU.............  1         0.112
.............................................GGAGCUCACAGUCUAUUGA...........  3         0.102
..............................................GAGCUCACAGUCUAUUGA...........  1         0.0118
..............................................GAGCUCACAGUCUAUUG............  1         0.0104
...............................................AGCUCACAGUCUAUUGA...........  1         0.00952
UCACUGCAGUUACAAAGACAAAUGAGAUAUGAUCCCUACCCUUGAGGAGCUCACAGUCUAUUGAACACAAGCAGC
...((((.(((.(((((((...((((......((((.......).))).))))..)))).))))))....)))). (-15.40)

Filter reads

by experiment
Accession Read count Tissue Link Comment Reference
ER0000000028 2ovary GEO : GSM510432 [ Chiang HR et al.]
ER0000000029 223ovary GEO : GSM510433 [ Chiang HR et al.]
ER0000000030 146ovary GEO : GSM510434 [ Chiang HR et al.]
ER0000000031 10ovary GEO : GSM510435 [ Chiang HR et al.]
ER0000000032 25testes GEO : GSM510436 [ Chiang HR et al.]
ER0000000033 127testes GEO : GSM510437 [ Chiang HR et al.]
ER0000000034 124testes GEO : GSM510438 [ Chiang HR et al.]
ER0000000035 7testes GEO : GSM510439 [ Chiang HR et al.]
ER0000000036 215brain GEO : GSM510440 [ Chiang HR et al.]
ER0000000037 1020brain GEO : GSM510441 [ Chiang HR et al.]
ER0000000038 1190brain GEO : GSM510442 [ Chiang HR et al.]
ER0000000039 120brain GEO : GSM510443 [ Chiang HR et al.]
ER0000000040 3885brain GEO : GSM510444 [ Chiang HR et al.]
ER0000000041 22whole body GEO : GSM510445 Newborn. [ Chiang HR et al.]
ER0000000042 266whole body GEO : GSM510446 newborn [ Chiang HR et al.]
ER0000000043 164whole body GEO : GSM510447 Newborn. [ Chiang HR et al.]
ER0000000044 28whole body GEO : GSM510448 Newborn. [ Chiang HR et al.]
ER0000000045 616whole body GEO : GSM510449 Newborn. [ Chiang HR et al.]
ER0000000046 821whole body GEO : GSM510450 Newborn. [ Chiang HR et al.]
ER0000000047 1037whole body GEO : GSM510451 Newborn. [ Chiang HR et al.]
ER0000000048 935whole body GEO : GSM510452 Newborn. [ Chiang HR et al.]
ER0000000049 956whole body GEO : GSM510453 Newborn. [ Chiang HR et al.]
ER0000000050 1022whole body GEO : GSM510454 Newborn. [ Chiang HR et al.]
ER0000000051 902whole body GEO : GSM510455 Newborn. [ Chiang HR et al.]
ER0000000052 3387whole body GEO : GSM510456 Newborn. [ Chiang HR et al.]
ER0000000053 190embryo GEO : GSM510457 Day 12.5 embryo [ Chiang HR et al.]
ER0000000054 1170embryo GEO : GSM510458 day 12.5 embryo [ Chiang HR et al.]
ER0000000055 1219embryo GEO : GSM510459 day 12.5 embryo [ Chiang HR et al.]
ER0000000056 136embryo GEO : GSM510460 day 12.5 embryo [ Chiang HR et al.]
ER0000000057 368embryo GEO : GSM510461 day 9.5 embryo [ Chiang HR et al.]
ER0000000058 1253embryo GEO : GSM510462 day 9.5 embryo [ Chiang HR et al.]
ER0000000059 1167embryo GEO : GSM510463 day 9.5 embryo [ Chiang HR et al.]
ER0000000060 94embryo GEO : GSM510464 day 9.5 embryo [ Chiang HR et al.]
ER0000000061 579embryo GEO : GSM510465 day 7.5 embryo [ Chiang HR et al.]
ER0000000062 1664embryo GEO : GSM510466 day 7.5 embryo [ Chiang HR et al.]
ER0000000063 1722embryo GEO : GSM510467 day 7.5 embryo [ Chiang HR et al.]
ER0000000216 85bone marrow GEO : GSM539835 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000217 70bone marrow GEO : GSM539836 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000218 272spleen GEO : GSM539837 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000219 293spleen GEO : GSM539838 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000220 698spleen GEO : GSM539839 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000221 227spleen GEO : GSM539840 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000222 137spleen GEO : GSM539841 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000223 176spleen GEO : GSM539842 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000224 75spleen GEO : GSM539843 strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000225 443peritoneal lavage GEO : GSM539844 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000226 95spleen GEO : GSM539845 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000227 1448lymph nodes GEO : GSM539846 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000228 28lymph nodes GEO : GSM539847 strain: IL-6 transgenic, gender: male, isolation: fluorescence activated cell sorting
ER0000000229 57bone marrow GEO : GSM539848 strain: C57BL/6J, gender: male
ER0000000230 96bone marrow GEO : GSM539849 strain: C57BL/6J, gender: male
ER0000000231 637bone marrow GEO : GSM539850 strain: C57BL/6J, gender: male
ER0000000232 151peritoneal lavage GEO : GSM539851 strain: C57BL/6J, gender: male
ER0000000233 26peritoneal lavage GEO : GSM539852 strain: C57BL/6J, gender: male
ER0000000234 169bone marrow GEO : GSM539853 strain: C57BL/6J, gender: male
ER0000000235 493bone marrow GEO : GSM539854 strain: C57BL/6J, gender: male
ER0000000236 171spleen GEO : GSM539855 strain: RAG-/-, gender: male
ER0000000237 171thymus GEO : GSM539856
ER0000000238 292spleen GEO : GSM539857 strain: C57BL/6J, gender: male
ER0000000239 256spleen GEO : GSM539858 strain: C57BL/6J, gender: male
ER0000000240 136spleen GEO : GSM539859 strain: C57BL/6J, gender: male
ER0000000241 346lymph nodes/spleen GEO : GSM539860 strain: C57BL/6J, gender: male
ER0000000242 378lymph nodes/spleen GEO : GSM539861 strain: C57BL/6J, gender: male
ER0000000243 352lymph nodes/spleen GEO : GSM539862 strain: C57BL/6J, gender: male
ER0000000244 571spleen GEO : GSM539863 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000245 334lymph nodes/spleen GEO : GSM539864 strain: C57BL/6J, gender: male
ER0000000246 181lymph nodes/spleen GEO : GSM539865 strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000247 143 GEO : GSM539866 strain: C57BL/6-129
ER0000000248 595 GEO : GSM539867 strain: C57BL/6J, developmental stage: E13.5
ER0000000249 38heart GEO : GSM539868 strain: C57BL/6J, gender: male
ER0000000250 268brain GEO : GSM539869 strain: C57BL/6J, gender: male
ER0000000251 221lung GEO : GSM539870 strain: C57BL/6J, gender: male
ER0000000252 58liver GEO : GSM539871 strain: C57BL/6J, gender: male
ER0000000253 354kidney GEO : GSM539872 strain: C57BL/6J, gender: male
ER0000000254 139pancreas GEO : GSM539873 strain: C57BL/6J, gender: male
ER0000000255 452skin GEO : GSM539874 strain: C57BL/6J, gender: male
ER0000000256 104skeletal muscle GEO : GSM539875 strain: C57BL/6J, gender: male
ER0000000257 346salivary glands GEO : GSM539876 strain: C57BL/6J, gender: male
ER0000000258 15testes GEO : GSM539877 strain: C57BL/6J, gender: male
ER0000000259 253ovary GEO : GSM539878 strain: C57BL/6J, gender: female
ER0000000260 258spleen GEO : GSM539879 strain: BclXL transgenic BalbC, gender: male
ER0000000261 2928lymph nodes GEO : GSM539880 strain: BclXL transgenic BalbC, gender: male
by # mismatches     Display untemplated ends
by read count min max

References

1
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).