Deep sequencing reads for mature sequence MIMAT0020510

Stem-loop ID

dme-mir-2535b

Mature ID

dme-miR-2535b-3p

Reads

                                           dme-miR-2535b-3p              Count     RPM (mean number of reads per million)
GUAAGUGACUAUGCCGGGAUUGUGG..............................................  13        0.504
GUAAGUGACUAUGCCGGGAUUG.................................................  4         0.16
GUAAGUGACUAUGCCGGGAU...................................................  4         0.285
GUAAGUGACUAUGCCGGGAUUGUG...............................................  3         0.231
GUAAGUGACUAUGCCGGGAUU..................................................  2         0.139
GUAAGUGACUAUGCCGGGA....................................................  2         0.114
GUAAGUGACUAUGCCGGG.....................................................  1         0.0677
GUAAGUGACUAUGCCGGGAUUGU................................................  1         0.0307
.UAAGUGACUAUGCCGGGAUUG.................................................  1         0.0157
.UAAGUGACUAUGCCGGGAUUGU................................................  1         0.0599
.UAAGUGACUAUGCCGGGAUUGUGG..............................................  1         0.00704
....GUGACUAUGCCGGGAUUGUGGUU............................................  1         0.0333
.........................UUAUUGAACUUAGCGUCUCC..........................  2         0.0229
.........................UUAUUGAACUUAGCGUCUC...........................  1         0.00704
..........................UAUUGAACUUAGCGUCUCCACU.......................  2         0.0257
.................................CUUAGCGUCUCCACUCACGGCAUUU.............  1         0.0805
...................................UAGCGUCUCCACUCACGGCAU...............  1         0.0677
......................................CGUCUCCACUCACGGCAUUUCAUU.........  1         0.0805
........................................UCUCCACUCACGGCAUUU.............  1         0.0582
.........................................CUCCACUCACGGCAUUUCAUUCA.......  1         0.0805
.............................................ACUCACGGCAUUUCAUUCACUU....  56        2.24
.............................................ACUCACGGCAUUUCAUUCACUUGCA.  50        3.99
.............................................ACUCACGGCAUUUCAUUCACUUG...  38        0.78
.............................................ACUCACGGCAUUUCAUUCACUUGCAG  36        1.8
.............................................ACUCACGGCAUUUCAUUCACU.....  28        1.82
.............................................ACUCACGGCAUUUCAUUCACUUGC..  21        0.871
..............................................CUCACGGCAUUUCAUUCACUUGCAG  4         0.164
..............................................CUCACGGCAUUUCAUUCACUUGCA.  2         0.141
...............................................UCACGGCAUUUCAUUCACUUGCA.  8         1.24
...............................................UCACGGCAUUUCAUUCACUUGCAG  7         0.199
...............................................UCACGGCAUUUCAUUCACUUGC..  6         0.322
...............................................UCACGGCAUUUCAUUCACUUG...  2         0.226
GUAAGUGACUAUGCCGGGAUUGUGGUUAUUGAACUUAGCGUCUCCACUCACGGCAUUUCAUUCACUUGCAG
((((((((..((((((.((..((((....((.......))...)))))).)))))).....)))))))).. (-23.90)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000010	19	head	GEO : GSM240749		[ Chung WJ et al.]
ER0000000012	9	S2 cell	GEO : GSM272652		[ Chung WJ et al.]
ER0000000013	3	Kc cell	GEO : GSM272653		[ Chung WJ et al.]
ER0000000014	4	imaginal disc	GEO : GSM275691		[ Chung WJ et al.]
ER0000000015	14	head	GEO : GSM286601		[ Chung WJ et al.]
ER0000000016	1	whole body	GEO : GSM286602		[ Chung WJ et al.]
ER0000000018	7	embryo	GEO : GSM286604		[ Chung WJ et al.]
ER0000000019	4	embryo	GEO : GSM286605		[ Chung WJ et al.]
ER0000000020	4	embryo	GEO : GSM286606		[ Chung WJ et al.]
ER0000000021	11	embryo	GEO : GSM286607		[ Chung WJ et al.]
ER0000000022	6	embryo	GEO : GSM286611		[ Chung WJ et al.]
ER0000000079	3	whole body	GEO : GSM322208	3rd instar larvae
ER0000000080	14	whole body	GEO : GSM322219	2-4 day old pupae
ER0000000083	41	head	GEO : GSM322533	adult female head
ER0000000084	128	head	GEO : GSM322543	adult male head
ER0000000087	2	whole body	GEO : GSM360260	0-1 day old pupae
ER0000000088	23	whole body	GEO : GSM360262	0-2 day old pupae
ER0000000090	1	whole body	GEO : GSM280082	from 2-4 day old flies
ER0000000093	2	whole body	GEO : GSM280085	from 2-4 day old flies
ER0000000096	2	S2 cell	GEO : GSM280088
ER0000000099	8	imaginal disc	GEO : GSM399105	imaginal disc/brain
ER0000000100	5	whole body	GEO : GSM399106	female body
ER0000000101	13	whole body	GEO : GSM399107	male body
ER0000000102	15	S2 cell	GEO : GSM371638
ER0000000115	6	head	GEO : GSM180328	adult heads (female heads, male heads)	[ Ruby JG et al.]
ER0000000119	1	embryo	GEO : GSM180332	mid embryo (6-10)	[ Ruby JG et al.]
ER0000000120	1	embryo	GEO : GSM180333	late embryo (12-24)	[ Ruby JG et al.]
ER0000000124	1	S2 cell	GEO : GSM180337	tissue culture cells (S2 only)	[ Ruby JG et al.]
ER0000000128	1	ovary	GEO : GSM385748	Ovary Somatic Sheet (OSS) cells
ER0000000129	1	ovary	GEO : GSM385821	Ovary Somatic Sheet (OSS) cells
ER0000000130	1	ovary	GEO : GSM385822	Ovary Somatic Sheet (OSS) cells

References

1. PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2. PMID:18501606 "Endogenous RNA interference provides a somatic defense against Drosophila transposons" Chung WJ, Okamura K, Martin R, Lai EC Curr Biol. 18:795-802(2008).