Deep sequencing reads for mature sequence MIMAT0020626

Stem-loop ID

mmu-mir-5118

Mature ID

mmu-miR-5118

Reads

                                       mmu-miR-5118                 Count     RPM (mean number of reads per million)
CUUAGGAGGCAGAGGUUGGCUGAUCUCUGCUUGAGUUCGAAGGUUAGGCCAGCCUGGUCUCCAAAGA
(((.((((((..((((((((((((((..((....))....)))))).)))))))).)))))).))). (-31.00)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000029	1	ovary	GEO : GSM510433		[ Chiang HR et al.]
ER0000000032	3	testes	GEO : GSM510436		[ Chiang HR et al.]
ER0000000033	8	testes	GEO : GSM510437		[ Chiang HR et al.]
ER0000000034	5	testes	GEO : GSM510438		[ Chiang HR et al.]
ER0000000046	1	whole body	GEO : GSM510450	Newborn.	[ Chiang HR et al.]
ER0000000051	1	whole body	GEO : GSM510455	Newborn.	[ Chiang HR et al.]
ER0000000052	2	whole body	GEO : GSM510456	Newborn.	[ Chiang HR et al.]
ER0000000057	1	embryo	GEO : GSM510461	day 9.5 embryo	[ Chiang HR et al.]
ER0000000058	2	embryo	GEO : GSM510462	day 9.5 embryo	[ Chiang HR et al.]
ER0000000062	1	embryo	GEO : GSM510466	day 7.5 embryo	[ Chiang HR et al.]
ER0000000063	2	embryo	GEO : GSM510467	day 7.5 embryo	[ Chiang HR et al.]
ER0000000221	1	spleen	GEO : GSM539840	strain: C57BL/6J, gender: male, isolation: CD43 negative magnetic beads selection
ER0000000227	1	lymph nodes	GEO : GSM539846	strain: C57BL/6J, gender: male, isolation: fluorescence activated cell sorting
ER0000000245	1	lymph nodes/spleen	GEO : GSM539864	strain: C57BL/6J, gender: male
ER0000000261	1	lymph nodes	GEO : GSM539880	strain: BclXL transgenic BalbC, gender: male

References

1. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).