Deep sequencing reads for mature sequence MIMAT0020870

Stem-loop ID

dme-mir-973

Mature ID

dme-miR-973-3p

Reads

                   dme-miR-973-5p                              dme-miR-973-3p                          Count     RPM (mean number of reads per million)
................CGUGGUUGGUGGUUGAACUUCGAUU............................................................  8         2.2
................CGUGGUUGGUGGUUGAACUUCGAUUU...........................................................  1         0.216
..................UGGUUGGUGGUUGAACUUCGAUUUU..........................................................  271       58.3
..................UGGUUGGUGGUUGAACUUCGA..............................................................  159       24.3
..................UGGUUGGUGGUUGAACUUCGAU.............................................................  77        11.9
..................UGGUUGGUGGUUGAACUUCGAUUU...........................................................  70        11.6
..................UGGUUGGUGGUUGAACUUCGAUU............................................................  55        9.06
..................UGGUUGGUGGUUGAACUUCG...............................................................  19        2.17
..................UGGUUGGUGGUUGAACUUC................................................................  3         0.228
...................GGUUGGUGGUUGAACUUCGA..............................................................  1         0.0931
......................UGGUGGUUGAACUUCGAUUUU..........................................................  1         0.161
..............................................................AAUCUGUUCAUUCUCCGACACA.................  23        3.31
..............................................................AAUCUGUUCAUUCUCCGACAC..................  1         0.216
...............................................................AUCUGUUCAUUCUCCGACACA.................  1         0.0931
................................................................UCUGUUCAUUCUCCGACACAAG...............  29        6.2
................................................................UCUGUUCAUUCUCCGACACAA................  11        1.11
................................................................UCUGUUCAUUCUCCGACACA.................  3         0.328
................................................................UCUGUUCAUUCUCCGACACAAGA..............  1         0.161
.................................................................CUGUUCAUUCUCCGACACAAG...............  1         0.0931
ACCGUCGUCGACUUUUCGUGGUUGGUGGUUGAACUUCGAUUUUAAGUAUUUAAAUAAAAUGAAAUCUGUUCAUUCUCCGACACAAGAAGUUCACGCAAAGG
.((..(((.(((((((.(((.((((.(..(((((...(((((((..(((....)))...))))))).)))))..).))))))).))))))).)))....)) (-28.70)

Filter reads

by experiment

Accession	Read count	Tissue	Link	Comment	Reference
ER0000000010	1	head	GEO : GSM240749		[ Chung WJ et al.]
ER0000000011	1	S2 cell	GEO : GSM272651		[ Chung WJ et al.]
ER0000000013	8	Kc cell	GEO : GSM272653		[ Chung WJ et al.]
ER0000000014	183	imaginal disc	GEO : GSM275691		[ Chung WJ et al.]
ER0000000015	1	head	GEO : GSM286601		[ Chung WJ et al.]
ER0000000016	26	whole body	GEO : GSM286602		[ Chung WJ et al.]
ER0000000018	42	embryo	GEO : GSM286604		[ Chung WJ et al.]
ER0000000019	7	embryo	GEO : GSM286605		[ Chung WJ et al.]
ER0000000021	23	embryo	GEO : GSM286607		[ Chung WJ et al.]
ER0000000022	10	embryo	GEO : GSM286611		[ Chung WJ et al.]
ER0000000023	1	embryo	GEO : GSM286613		[ Chung WJ et al.]
ER0000000079	8	whole body	GEO : GSM322208	3rd instar larvae
ER0000000080	18	whole body	GEO : GSM322219	2-4 day old pupae
ER0000000082	2	whole body	GEO : GSM322338	2-4 day old pupae
ER0000000083	5	head	GEO : GSM322533	adult female head
ER0000000084	7	head	GEO : GSM322543	adult male head
ER0000000085	3	whole body	GEO : GSM360256	1st instar larvae
ER0000000086	2	whole body	GEO : GSM360257	1st instar larvae
ER0000000087	4	whole body	GEO : GSM360260	0-1 day old pupae
ER0000000088	14	whole body	GEO : GSM360262	0-2 day old pupae
ER0000000089	6	embryo	GEO : GSM364902	12-24hr embryo
ER0000000093	50	whole body	GEO : GSM280085	from 2-4 day old flies
ER0000000095	2	S2 cell	GEO : GSM280087
ER0000000099	235	imaginal disc	GEO : GSM399105	imaginal disc/brain
ER0000000100	1	whole body	GEO : GSM399106	female body
ER0000000101	141	whole body	GEO : GSM399107	male body
ER0000000116	2	whole body	GEO : GSM180329	adult bodies (female bodies, male bodies)	[ Ruby JG et al.]
ER0000000118	1	embryo	GEO : GSM180331	early embryo (2-6)	[ Ruby JG et al.]
ER0000000119	2	embryo	GEO : GSM180332	mid embryo (6-10)	[ Ruby JG et al.]
ER0000000121	1	whole body	GEO : GSM180334	larvae: 1st instar and 3rd instars	[ Ruby JG et al.]
ER0000000122	23	imaginal disc	GEO : GSM180335		[ Ruby JG et al.]

References

1. PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2. PMID:18501606 "Endogenous RNA interference provides a somatic defense against Drosophila transposons" Chung WJ, Okamura K, Martin R, Lai EC Curr Biol. 18:795-802(2008).