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miRBase |
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Stem-loop sequence cel-mir-54 |
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Accession | MI0000025 (change log) | |||||||||
Description | Caenorhabditis elegans miR-54 stem-loop | |||||||||
Gene family | MIPF0000874; mir-54 | |||||||||
Literature search |
1 open access papers mention cel-mir-54 | |||||||||
Stem-loop |
g cgc a - - cg a a uug u 5' gu agu gcucugacu ggau auga ga acg g aca cuuu u || ||| ||||||||| |||| |||| || ||| | ||| |||| 3' ca ucg cgggacuga ccua uacu cu ugc c ugu gaaa u g -au g a u aa c a uca a |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence cel-miR-54-5p |
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Accession | MIMAT0020773 |
Sequence |
19 - aggauaugagacgacgagaaca - 40 |
Deep sequencing | 142657 reads, 17 experiments |
Evidence | experimental; Illumina [7] |
Database links |
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Mature sequence cel-miR-54-3p |
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Accession | MIMAT0000025 |
Previous IDs | cel-miR-54 |
Sequence |
61 - uacccguaaucuucauaauccgag - 84 |
Deep sequencing | 98962 reads, 17 experiments |
Evidence | experimental; cloned [1-3], 454 [4], Illumina [5,7], CLIPseq [6] |
Database links |
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Predicted targets |
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References |
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1 |
PMID:11679671
"An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans"
Science. 294:858-862(2001).
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2 |
PMID:12672692
"The microRNAs of Caenorhabditis elegans"
Genes Dev. 17:991-1008(2003).
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3 |
PMID:12747828
"MicroRNAs and other tiny endogenous RNAs in C. elegans"
Curr Biol. 13:807-818(2003).
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4 |
PMID:17174894
"Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans"
Cell. 127:1193-1207(2006).
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5 | |
6 |
PMID:20062054
"Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans"
Nat Struct Mol Biol. 17:173-179(2010).
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7 |