Stem-loop sequence cel-mir-54

Accession MI0000025
Description Caenorhabditis elegans miR-54 stem-loop
Stem-loop 
  g   cgc         a    -    -  cg   a a   uug    u 
gu agu   gcucugacu ggau auga ga  acg g aca   cuuu u
|| |||   ||||||||| |||| |||| ||  ||| | |||   ||||  
ca ucg   cgggacuga ccua uacu cu  ugc c ugu   gaaa u
  g   -au         g    a    u  aa   c a   uca    a
Get sequence
Deep sequencing
12488 reads, 6 experiments
Genome context
Coordinates (WBcel215) Overlapping transcripts
X: 13144926-13145024 [-]
antisense
F09A5.3b ; F09A5.3b; intron 1
F09A5.3b ; F09A5.3b; intron 1
F09A5.3b ; F09A5.3b; intron 1
Clustered miRNAs
< 10kb from cel-mir-54
cel-mir-54 X: 13144926-13145024 [-]
cel-mir-55 X: 13144757-13144854 [-]
cel-mir-56 X: 13144621-13144717 [-]
Database links

Mature sequence cel-miR-54-5p

Accession MIMAT0020773
Sequence

19 -  

aggauaugagacgacgagaaca

 - 40

Get sequence
Deep sequencing 74 reads, 3 experiments
Evidence experimental; Solexa [7]
Predicted targets

Mature sequence cel-miR-54-3p

Accession MIMAT0000025
Previous IDs cel-miR-54
Sequence

61 -  

uacccguaaucuucauaauccgag

 - 84

Get sequence
Deep sequencing 12414 reads, 6 experiments
Evidence experimental; cloned [1-4], Solexa [5,7], CLIPseq [6]
Predicted targets

References

1
PMID:11679671 "An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans" Lau NC, Lim LP, Weinstein EG, Bartel DP Science. 294:858-862(2001).
2
PMID:12672692 "The microRNAs of Caenorhabditis elegans" Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP Genes Dev. 17:991-1008(2003).
3
PMID:12747828 "MicroRNAs and other tiny endogenous RNAs in C. elegans" Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D Curr Biol. 13:807-818(2003).
4
PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
5
PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).
6
PMID:20062054 "Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans" Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW Nat Struct Mol Biol. 17:173-179(2010).
7
PMID:21307183 "Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer" Warf MB, Johnson WE, Bass BL RNA. 17:563-577(2011).