Stem-loop sequence cel-mir-57

Accession MI0000028
Description Caenorhabditis elegans miR-57 stem-loop
Gene family MIPF0000271; mir-57
Stem-loop 
----------a   aca  c    c    c     a  g    g     u   a 
           ucg   ug ucgu uacc uguag uc agcu ugugu uga a
           |||   || |||| |||| ||||| || |||| ||||| ||| c
           agc   ac agca gugg acauc ag ucga gcaca acu a
aaguauuuaga   caa  a    c    a     -  a    -     u   a
Get sequence
Deep sequencing
6677 reads, 6 experiments
Genome context
Coordinates (WBcel215) Overlapping transcripts
II: 7850447-7850545 [-]
antisense
T09A5.19 ; T09A5.19; exon 1
T09A5.19 ; T09A5.19; exon 1
Database links

Mature sequence cel-miR-57-5p

Accession MIMAT0000029
Previous IDs cel-miR-57
Sequence

16 -  

uacccuguagaucgagcugugugu

 - 39

Get sequence
Deep sequencing 6634 reads, 6 experiments
Evidence experimental; cloned [1-3], Solexa [4,6], CLIPseq [5]
Validated targets
Predicted targets

Mature sequence cel-miR-57-3p

Accession MIMAT0020314
Previous IDs cel-miR-57*
Sequence

55 -  

acgagcuagacuacaaggugca

 - 76

Get sequence
Deep sequencing 43 reads, 3 experiments
Evidence experimental; Solexa [6]
Predicted targets

References

1
PMID:11679671 "An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans" Lau NC, Lim LP, Weinstein EG, Bartel DP Science. 294:858-862(2001).
2
PMID:12672692 "The microRNAs of Caenorhabditis elegans" Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP Genes Dev. 17:991-1008(2003).
3
PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
4
PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).
5
PMID:20062054 "Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans" Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW Nat Struct Mol Biol. 17:173-179(2010).
6
PMID:21307183 "Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer" Warf MB, Johnson WE, Bass BL RNA. 17:563-577(2011).