Stem-loop sequence cel-mir-58

Accession MI0000029
Description Caenorhabditis elegans miR-58 stem-loop
Gene family MIPF0000282; mir-58
Stem-loop 
------     ucaua         c    cuu  c        a  -uc  c 
      gcucg     uccauugcc uacu   cg aucucauc cu   gu c
      |||||     ||||||||| ||||   || |||||||| ||   || a
      cgagu     agguaacgg auga   gc uagaguag ga   ca a
ugagau     ----c         c    cuu  -        g  uac  u
Get sequence
Deep sequencing
88545 reads, 6 experiments
Genome context
Coordinates (WBcel215) Overlapping transcripts
IV: 3233251-3233347 [+]
sense
Y67D8A.6 ; Y67D8A.6; exon 1
Y67D8A.6 ; Y67D8A.6; exon 1
Y67D8A.6 ; Y67D8A.6; exon 1
Y67D8A.1.2 ; Y67D8A.1.2; intron 4
Y67D8A.1.1 ; Y67D8A.1.1; intron 4
Y67D8A.2a.2 ; Y67D8A.2a.2; intron 8
Y67D8A.2a.1 ; Y67D8A.2a.1; intron 8
Y67D8A.2b.1 ; Y67D8A.2b.1; intron 8
Y67D8A.2b.2 ; Y67D8A.2b.2; intron 8
Y67D8A.2a.3 ; Y67D8A.2a.3; intron 8
Y67D8A.2b.3 ; Y67D8A.2b.3; intron 8
Y67D8A.2a.2 ; Y67D8A.2a.2; intron 8
Y67D8A.2a.1 ; Y67D8A.2a.1; intron 8
Y67D8A.2b.1 ; Y67D8A.2b.1; intron 8
Y67D8A.2b.2 ; Y67D8A.2b.2; intron 8
Y67D8A.2a.3 ; Y67D8A.2a.3; intron 8
Y67D8A.2b.3 ; Y67D8A.2b.3; intron 8
Database links

Mature sequence cel-miR-58-5p

Accession MIMAT0015100
Previous IDs cel-miR-58*
Sequence

16 -  

ugcccuacucuucgcaucuca

 - 36

Get sequence
Deep sequencing 576 reads, 5 experiments
Evidence experimental; CLIPseq [7]
Predicted targets

Mature sequence cel-miR-58-3p

Accession MIMAT0000030
Previous IDs cel-miR-58
Sequence

61 -  

ugagaucguucaguacggcaau

 - 82

Get sequence
Deep sequencing 87967 reads, 6 experiments
Evidence experimental; cloned [1-5], Solexa [6], CLIPseq [7]
Validated targets
Predicted targets

References

1
PMID:11679671 "An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans" Lau NC, Lim LP, Weinstein EG, Bartel DP Science. 294:858-862(2001).
2
PMID:11679672 "An extensive class of small RNAs in Caenorhabditis elegans" Lee RC, Ambros V Science. 294:862-864(2001).
3
PMID:12672692 "The microRNAs of Caenorhabditis elegans" Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP Genes Dev. 17:991-1008(2003).
4
PMID:12747828 "MicroRNAs and other tiny endogenous RNAs in C. elegans" Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D Curr Biol. 13:807-818(2003).
5
PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
6
PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).
7
PMID:20062054 "Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans" Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW Nat Struct Mol Biol. 17:173-179(2010).