Accession
MI0000043
Description
Caenorhabditis elegans
cel-mir-72 precursor miRNA mir-72
Gene
family?
family?
RF04091;
mir-72
Literature search
6 open access papers mention cel-mir-72
(12 sentences)
(12 sentences)
Sequence
10546080
reads,
52028
reads per million, 16 experiments
aggucccgucagagcuAGGCAAGAUGUUGGCAUAGCUGAaugaucgcuauaacaacuaucAGCUUCGCCACAUUCUGCCACGcacugaugugaggaccu
((((((((((((.((..((((.(((((.(((..((((((...................))))))..)))))))).))))..)).))))))...))))))
((((((((((((.((..((((.(((((.(((..((((((...................))))))..)))))))).))))..)).))))))...))))))
Structure
--- a uA A U AU augaucgc
aggucc cgucag gc GGCA GAUGU GGC AGCUGA u
|||||| |||||| || |||| ||||| ||| |||||| a
uccagg guaguc cG CCGU UUACA CCG UCGAcu u
agu a CA C - CU aucaacaa
Annotation confidence
High
Do you think this miRNA is real?
Comments
The expression of C. elegans miR-72 was confirmed by PCR amplification, cloning and sequencing. The predicted hairpin precursor sequence presented here is supported by conservation in C. elegans and C. briggsae (MIR:MI0000751), and differs from that shown in [1] (Uwe Ohler, pers. comm.). The extents of the dominant mature miRNA species are adjusted here in accordance with a large scale cloning and sequencing study [5].
Genome context
chrII: 2452838-2452936 [+]
Database links
Mature cel-miR-72-5p
| Accession | MIMAT0000044 |
| Description | Caenorhabditis elegans cel-miR-72-5p mature miRNA |
| Sequence | 17 - AGGCAAGAUGUUGGCAUAGCUGA - 39 |
| Evidence |
experimental
cloned [1-4], 454 [5], Illumina [6,8], CLIPseq [7] |
| Database links |
|
| Predicted targets |
|
Mature cel-miR-72-3p
| Accession | MIMAT0020318 |
| Description | Caenorhabditis elegans cel-miR-72-3p mature miRNA |
| Sequence | 61 - AGCUUCGCCACAUUCUGCCACG - 82 |
| Evidence |
experimental
Illumina [8] |
| Database links |
|
References
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