Stem-loop sequence cel-mir-75

Accession MI0000046
Description Caenorhabditis elegans miR-75 stem-loop
Gene family MIPF0000273; mir-75
Stem-loop 
uucuugu      -ga   a   c         ca     a    -   au 
       ugcuuu   aga uug agucgguug  agcuu aaua caa  c
       ||||||   ||| ||| |||||||||  ||||| |||| |||  c
       acgaga   ucu aac ucggccaac  ucgaa uuau guu  g
------g      aag   g   u         ca     a    u   aa
Get sequence
Deep sequencing
3579 reads, 6 experiments
Genome context
Coordinates (WBcel215) Overlapping transcripts
X: 2372446-2372542 [+]
intergenic
Clustered miRNAs
< 10kb from cel-mir-75
cel-mir-73 X: 2368757-2368855 [+]
cel-mir-74 X: 2369035-2369131 [+]
cel-mir-75 X: 2372446-2372542 [+]
Database links

Mature sequence cel-miR-75-5p

Accession MIMAT0015108
Previous IDs cel-miR-75*
Sequence

23 -  

cagucgguugcaagcuuaaaua

 - 44

Get sequence
Deep sequencing 55 reads, 6 experiments
Evidence experimental; CLIPseq [5], Solexa [6]
Predicted targets

Mature sequence cel-miR-75-3p

Accession MIMAT0000047
Previous IDs cel-miR-75
Sequence

61 -  

uuaaagcuaccaaccggcuuca

 - 82

Get sequence
Deep sequencing 3524 reads, 6 experiments
Evidence experimental; cloned [1-3], Solexa [4,6], CLIPseq [5]
Validated targets
Predicted targets

References

1
PMID:11679671 "An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans" Lau NC, Lim LP, Weinstein EG, Bartel DP Science. 294:858-862(2001).
2
PMID:12672692 "The microRNAs of Caenorhabditis elegans" Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP Genes Dev. 17:991-1008(2003).
3
PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
4
PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).
5
PMID:20062054 "Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans" Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW Nat Struct Mol Biol. 17:173-179(2010).
6
PMID:21307183 "Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer" Warf MB, Johnson WE, Bass BL RNA. 17:563-577(2011).