Stem-loop sequence cel-mir-77

Accession MI0000048
Description Caenorhabditis elegans miR-77 stem-loop
Gene family MIPF0000272; mir-77
Stem-loop 
gcaucugc     - ---   c               cu    g     ac   c 
        caaac c   gcc guuuggaugguugug  cuga gaaau  gca a
        ||||| |   ||| |||||||||||||||  |||| |||||  ||| g
        guuug g   ugg uaaaccugucgauac  gacu cuuua  ugu a
--------     a aua   u               cg    a     -c   a
Get sequence
Deep sequencing
24327 reads, 6 experiments
Genome context
Coordinates (WBcel215) Overlapping transcripts
II: 12519204-12519303 [+]
intergenic
Database links

Mature sequence cel-miR-77-5p

Accession MIMAT0020774
Sequence

24 -  

gaugguugugcucugaggaaau

 - 45

Get sequence
Deep sequencing 138 reads, 6 experiments
Evidence experimental; Solexa [6]
Predicted targets

Mature sequence cel-miR-77-3p

Accession MIMAT0000049
Previous IDs cel-miR-77
Sequence

62 -  

uucaucaggccauagcugucca

 - 83

Get sequence
Deep sequencing 24189 reads, 6 experiments
Evidence experimental; cloned [1-3], Solexa [4,6], CLIPseq [5]
Predicted targets

References

1
PMID:11679671 "An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans" Lau NC, Lim LP, Weinstein EG, Bartel DP Science. 294:858-862(2001).
2
PMID:12672692 "The microRNAs of Caenorhabditis elegans" Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP Genes Dev. 17:991-1008(2003).
3
PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
4
PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).
5
PMID:20062054 "Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans" Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW Nat Struct Mol Biol. 17:173-179(2010).
6
PMID:21307183 "Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer" Warf MB, Johnson WE, Bass BL RNA. 17:563-577(2011).