Accession
MI0000058
Description
Caenorhabditis elegans
cel-mir-87 precursor miRNA
Gene family
MIPF0000152;
mir-87
Literature search
6 open access papers mention cel-mir-87
(13 sentences)
(13 sentences)
Sequence
50801
reads,
946
reads per million, 16 experiments
gguugugccauccggcCGCCUGAUACUUUCGUCUCAACCUcgcugucagauuggucguagGUGAGCAAAGUUUCAGGUGUGCcggaacacaccc
(((.(((...(((((((((((((.(((((.(.((((.((((((((......))).)).))))))))))))).))))))).)))))).)))))).
(((.(((...(((((((((((((.(((((.(.((((.((((((((......))).)).))))))))))))).))))))).)))))).)))))).
Structure
- u cca - U C U A - - uc ggu gug uccggc CGCCUGA ACUUU G CUCA CCU cg cug a ||| ||| |||||| ||||||| ||||| | |||| ||| || ||| cca cac aggcCG GUGGACU UGAAA C GAGU Gga gc ggu g c - --a U U - - - u u ua
Annotation confidence
High
Do you think this miRNA is real?
Comments
mir-87 is has found to be most abundant in the L1 stage of larval development in Caenorhabditis elegans. mir-87 orthologues have been found in C. briggsae, Drosophila melanogaster and humans [1]. The extents of the dominant mature miRNA species are adjusted here in accordance with a large scale cloning and sequencing study [4].
Genome context
chrV: 12038688-12038781 [-]
Database links
Mature cel-miR-87-3p
| Accession | MIMAT0000060 |
| Description | Caenorhabditis elegans cel-miR-87-3p mature miRNA |
| Sequence | 61 - GUGAGCAAAGUUUCAGGUGUGC - 82 |
| Evidence |
experimental
cloned [1-3], 454 [4], Illumina [5,7], CLIPseq [6] |
| Database links |
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| Predicted targets |
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Mature cel-miR-87-5p
| Accession | MIMAT0020325 |
| Description | Caenorhabditis elegans cel-miR-87-5p mature miRNA |
| Sequence | 17 - CGCCUGAUACUUUCGUCUCAACCU - 40 |
| Evidence |
experimental
Illumina [7] |
| Database links |
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References
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