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miRBase |
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Stem-loop sequence dme-mir-10 |
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Accession | MI0000130 (change log) | ||||
Description | Drosophila melanogaster miR-10 stem-loop | ||||
Gene family | MIPF0000033; mir-10 | ||||
Literature search |
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19 open access papers mention dme-mir-10 | ||||
Stem-loop |
ucu - g u auacu 5' ccacg acc cu uaga ccgaauuuguuuu a ||||| ||| || |||| ||||||||||||| 3' ggugu ugg ga aucu ggcuuaaacagga g guu a g u auuuc |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Comments |
The first cloning experiments identified the mature miR-10 from the 5' arm of the D. melanogaster precursor [1,3]. High-throughput sequencing later showed that the sequence from the 3' arm dominates [4-5]. |
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Genome context |
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Database links |
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Mature sequence dme-miR-10-5p |
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Accession | MIMAT0000115 |
Previous IDs | dme-miR-10;dme-miR-10* |
Sequence |
9 - acccuguagauccgaauuuguu - 30 |
Deep sequencing | 440197 reads, 48 experiments |
Evidence | experimental; cloned [1,3], Northern [1-3], 454 [4-5], Illumina [5] |
Database links |
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Predicted targets |
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Mature sequence dme-miR-10-3p |
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Accession | MIMAT0012531 |
Previous IDs | dme-miR-10 |
Sequence |
49 - caaauucgguucuagagagguuu - 71 |
Deep sequencing | 438977 reads, 48 experiments |
Evidence | experimental; cloned [1,3], Northern [1-3], 454 [4-5], Illumina [5] |
Database links |
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Predicted targets |
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References |
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1 |
PMID:11679670
"Identification of novel genes coding for small expressed RNAs"
Science. 294:853-858(2001).
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2 | |
3 |
PMID:12919683
"The small RNA profile during Drosophila melanogaster development"
Dev Cell. 5:337-350(2003).
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4 |
PMID:17989254
"Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs"
Genome Res. 17:1850-1864(2007).
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5 |
PMID:17989255
"Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes"
Genome Res. 17:1865-1879(2007).
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