Accession
MI0000184
Description
Arabidopsis thaliana
ath-MIR157a precursor miRNA
Gene family
MIPF0000008;
MIR156
Literature search
18 open access papers mention ath-MIR157a
(232 sentences)
(232 sentences)
Sequence
gugUUGACAGAAGAUAGAGAGCACagaugaugagauacaauucggagcauguucuuugcaucuuacuccuuuguGCUCUCUAGCCUUCUGUCAUCacc
(((.(((((((((.(((((((((((((.((((((((.(((...(((......)))))).)))))).)).)))))))))))))..))))))))).))).
(((.(((((((((.(((((((((((((.((((((((.(((...(((......)))))).)))))).)).)))))))))))))..))))))))).))).
Structure
- U -A u - a uuc gc gug UGACAGAAG UAGAGAGCACaga ga ugagau caa gga a ||| ||||||||| ||||||||||||| || |||||| ||| ||| caC ACUGUCUUC AUCUCUCGuguuu cu auucua guu ucu u c U CG c c c --- ug
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
MIR157a is thought, like the miR156 family, to target mRNAs coding for proteins containing the Squamosa-promoter Binding Protein (SBP) box [2].
Genome context
chr1: 24913202-24913299 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ath-MIR157a
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ath-miR157a-5p
| Accession | MIMAT0000172 |
| Description | Arabidopsis thaliana ath-miR157a-5p mature miRNA |
| Sequence | 4 - UUGACAGAAGAUAGAGAGCAC - 24 |
| Evidence |
experimental
cloned [1,3], Northern [1], 3'RACE [3], 454 [4-5], MPSS [4], Illumina [6] |
Mature ath-miR157a-3p
| Accession | MIMAT0031870 |
| Description | Arabidopsis thaliana ath-miR157a-3p mature miRNA |
| Sequence | 75 - GCUCUCUAGCCUUCUGUCAUC - 95 |
| Evidence | not_experimental |
References
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