miRBase entry: ath-MIR157c

Stem-loop ath-MIR157c


Accession
MI0000186
Description
Arabidopsis thaliana ath-MIR157c precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
16 open access papers mention ath-MIR157c
(202 sentences)

Sequence

agguuugagagugauguugguugUUGACAGAAGAUAGAGAGCACuaaggaugacaugcaaguacauacauauauaucaucacaccgcauguggaugauaaaauauguauaacaaauucaaagaaagagagggagagaaagagagagaaccugcaucucuacucuuuuguGCUCUCUAUACUUCUGUCACCaccuuuaucucuucuucucucuaaccu
(((((.(((((.((((..(((.((.(((((((((((((((((((....................((((((((.(((((((.(((.....))))))))))..))))))))............(((((((..(((((...((.(......)))...))))).)))))))))))))))))).)))))))))).)))..)))).......))))).)))))

Structure
     u     ------u    uu   u  U        -           --------------------------------------uaaggaugacaugcaaguac        -a       a   c 
agguu gagag       gaug  ggu gU GACAGAAG AUAGAGAGCAC                                                          auacauau  uaucauc cac g
||||| |||||       ||||  ||| || |||||||| |||||||||||                                                          ||||||||  ||||||| ||| c
uccaa cucuc       cuau  cca CA CUGUCUUC UAUCUCUCGug                                                          uauguaua  auaguag gug a
     u     uucuucu    uu   C  -        A           uuuucucaucucuacguccaagagagagaaagagagggagagaaagaaacuuaaacaa        aa       -   u 


Annotation confidence Not enough data
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Comments
MIR157c is thought, like the miR156 family, to target mRNAs coding for proteins containing the Squamosa-promoter Binding Protein (SBP) box [2].

Genome context
chr3: 6244500-6244716 [-]

Database links

Mature ath-miR157c-5p

Accession MIMAT0000174
Description Arabidopsis thaliana ath-miR157c-5p mature miRNA
Sequence 24 - UUGACAGAAGAUAGAGAGCAC - 44
Evidence experimental
cloned [1,3], Northern [1], 5'RACE [3], 454 [4-5], MPSS [4], Illumina [6]

Mature ath-miR157c-3p

Accession MIMAT0031872
Description Arabidopsis thaliana ath-miR157c-3p mature miRNA
Sequence 170 - GCUCUCUAUACUUCUGUCACC - 190
Evidence not_experimental

References

  1. PubMed ID: 12101121
    MicroRNAs in plants
    "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
    "Genes Dev (2002) 16:1616-1626

  2. PubMed ID: 12202040
    Prediction of plant microRNA targets
    "Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP"
    "Cell (2002) 110:513-520

  3. PubMed ID: 16040653
    Expression of Arabidopsis MIRNA genes
    "Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC"
    "Plant Physiol (2005) 138:2145-2154

  4. PubMed ID: 16954541
    MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
    "Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC"
    "Genome Res (2006) 16:1276-1288

  5. PubMed ID: 17182867
    A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
    "Genes Dev (2006) 20:3407-3425

  6. PubMed ID: 19815687
    Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
    "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
    "J Exp Bot (2010) 61:165-177