Stem-loop ath-MIR157d

Accession

MI0000187

Description

Arabidopsis thaliana ath-MIR157d precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

17 open access papers mention ath-MIR157d
(195 sentences)

Sequence

guggagggugauagugugguugcUGACAGAAGAUAGAGAGCACuaaggaugcuaugcaaaacagacacagauauguguuucuaauuguauuucauacuuuaaccucaaaguugauauaaaaaaagaaagaaagauagaagagcuagaagacuaucugcaucucuauuccuaugugcucucuaugcuucugucaucaccuuucuuucucuauuucucucuac
((((((((.(((((...(((.(.((((((((((((((((((((..((((((..((((((...(((((((....)))))))....))))))..)))...(((((......)))))..................((((((.((((.(((......))))).)))))))))))..))))))))))).))))))))).)))).........))))).))))))))

Structure

        u     ------ugu   u c         -           ua   ------------------------------------------------------------------------   cu      -aac       g 
guggaggg gauag         ggu g UGACAGAAG AUAGAGAGCAC  agg                                                                        aug  augcaa    agacaca a
|||||||| |||||         ||| | ||||||||| |||||||||||  |||                                                                        |||  ||||||    |||||||  
caucucuc uuauc         cca c acugucuuc uaucucucgug  ucc                                                                        uac  uauguu    uuugugu u
        u     ucuuucuuu   - u         g           ua   uuaucucuacgucuaucagaagaucgagaagauagaaagaaagaaaaaaauauaguugaaacuccaauuuca   uu      aauc       a 

Annotation confidence Not enough data

Comments

MIR157d is thought, like the MIR156 family, to target mRNAs coding for proteins containing the Squamosa-promoter Binding Protein (SBP) box [2].

Genome context

chr1: 18026811-18027031 [-]

Mature ath-miR157d

• Accession: MIMAT0000175
• Description: Arabidopsis thaliana ath-miR157d mature miRNA
• Sequence: 24 - UGACAGAAGAUAGAGAGCAC - 43
• Evidence: experimental ; cloned [1,3], Northern [1], 5'RACE [3], 454 [4-5], MPSS [4], Illumina [6]

References

1. PubMed ID: 12101121
   MicroRNAs in plants
   "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
   "Genes Dev (2002) 16:1616-1626


2. PubMed ID: 12202040
   Prediction of plant microRNA targets
   "Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP"
   "Cell (2002) 110:513-520


3. PubMed ID: 16040653
   Expression of Arabidopsis MIRNA genes
   "Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC"
   "Plant Physiol (2005) 138:2145-2154


4. PubMed ID: 16954541
   MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
   "Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC"
   "Genome Res (2006) 16:1276-1288


5. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425


6. PubMed ID: 19815687
   Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
   "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
   "J Exp Bot (2010) 61:165-177