Stem-loop ath-MIR160c

Accession

MI0000192

Description

Arabidopsis thaliana ath-MIR160c precursor miRNA

Gene family

MIPF0000032; MIR160

Literature search

36 open access papers mention ath-MIR160c
(111 sentences)

Sequence

guuaUGCCUGGCUCCCUGUAUGCCAcgaguggauaccgauuuugguuuuaaaaucggcugccgguggCGUACAAGGAGUCAAGCAUGAc
(((((((.(((((((.((((((((((..((((...(((((((((....)))))))))))))..)))))))))).))))))).)))))))

Structure

       C       C          ga    aua         g 
guuaUGC UGGCUCC UGUAUGCCAc  gugg   ccgauuuug u
||||||| ||||||| ||||||||||  ||||   |||||||||  
cAGUACG ACUGAGG ACAUGCggug  cguc   ggcuaaaau u
       A       A          gc    ---         u 

Annotation confidence Not enough data

Comments

MIR160c is thought to target mRNAs coding for auxin response factor proteins [2].

Genome context

chr5: 19009094-19009182 [-]

Mature ath-miR160c-5p

• Accession: MIMAT0000180
• Description: Arabidopsis thaliana ath-miR160c-5p mature miRNA
• Sequence: 5 - UGCCUGGCUCCCUGUAUGCCA - 25
• Evidence: experimental ; cloned [1,3], Northern [1], 5'RACE [3], 454 [4-5], MPSS [4], Illumina [6]

Mature ath-miR160c-3p

• Accession: MIMAT0031875
• Description: Arabidopsis thaliana ath-miR160c-3p mature miRNA
• Sequence: 68 - CGUACAAGGAGUCAAGCAUGA - 88
• Evidence: experimental ; Illumina [7]

References

1. PubMed ID: 12101121
   MicroRNAs in plants
   "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
   "Genes Dev (2002) 16:1616-1626


2. PubMed ID: 12202040
   Prediction of plant microRNA targets
   "Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP"
   "Cell (2002) 110:513-520


3. PubMed ID: 16040653
   Expression of Arabidopsis MIRNA genes
   "Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC"
   "Plant Physiol (2005) 138:2145-2154


4. PubMed ID: 16954541
   MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
   "Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC"
   "Genome Res (2006) 16:1276-1288


5. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425


6. PubMed ID: 19815687
   Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
   "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
   "J Exp Bot (2010) 61:165-177


7. PubMed ID: 24119003
   Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
   Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutiérrez RA
   BMC Genomics (2013) 14:701