Accession
MI0000193
Description
Arabidopsis thaliana
ath-MIR161 precursor miRNA MIR161
Gene
family?
family?
RF04079;
MIR161
Literature search
12 open access papers mention ath-MIR161
(41 sentences)
(41 sentences)
Sequence
ugcuugaucucgguuuuugaccaguuuauugcgucgaUCAAUGCAUUGAAAGUGACUACAUCGGGGUuccgauuuuuuuuguucuucauaugaugaagcggaaacaguaaucaacccugguuuagucacuuucacugcauuaaucaaugcauuuguaaaaagagggaaaagca
(((((..((((((((...))))..((((((((((.(((.((((((.((((((((((((.(((((((((...(((.((((((..((((((...)))))))))))).)))....))))))))).)))))))))))).)))))).))).)))))...)))))..))))...)))))
(((((..((((((((...))))..((((((((((.(((.((((((.((((((((((((.(((((((((...(((.((((((..((((((...)))))))))))).)))....))))))))).)))))))))))).)))))).))).)))))...)))))..))))...)))))
Structure
-ga gguuuuugaccag --- c C U C -ccg u uu a
ugcuu ucuc uuuau ugcgu gaU AAUGCA UGAAAGUGACUA AUCGGGGUu auu uuuuug cuucau
||||| |||| ||||| ||||| ||| |||||| |||||||||||| ||||||||| ||| |||||| |||||| u
acgaa ggag aaaug acgua cua uuacgu acuuucacugau uggucccaa uga aaaggc gaagua
aag -----------aa uuu a a c u cuaa c -- g
Annotation confidence
Low
Do you think this miRNA is real?
Comments
MIR161 is to target mRNAs coding for PPR repeat proteins [2].
Genome context
chr1: 17825685-17825857 [+]
Database links
Mature ath-miR161.2
| Accession | MIMAT0006779 |
| Description | Arabidopsis thaliana ath-miR161.2 mature miRNA |
| Sequence | 38 - UCAAUGCAUUGAAAGUGACUA - 58 |
| Evidence |
experimental
cloned [3], PARE [6], Illumina [7] |
Mature ath-miR161.1
| Accession | MIMAT0000181 |
| Description | Arabidopsis thaliana ath-miR161.1 mature miRNA |
| Sequence | 47 - UGAAAGUGACUACAUCGGGGU - 67 |
| Evidence |
experimental
cloned [1,3], Northern [1], 5'RACE [3], 454 [4-5], MPSS [5], Illumina [7] |
References
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